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[177340_at]

Description CD4.7 /REP_DB=WormBase Gene ID /WP=CE16955 /TR=O44161 /GB=AAB88345.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 86      4grp_highest_8_8 > 31      4grp_high_8_8 > 05      6grp_highest_nonorm > 92      6grp_total > 87      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 265
1 2 3 4 range
A 171.5
(-2.5)
P 		168.2
(-2.6)
P 		154.7
(-3)
P 		367.3
(3)
P 		213
B 191.4
(-1)
P 		160.8
(-3)
P 		168.5
(-2.5)
P 		250.4
(3)
P 		90
C 221.7
(-1.1)
P 		177.4
(-2.1)
P 		138.3
(-3)
P 		403.3
(3)
P 		265
avr 194.9
(-1.7) 		168.8
(-2.5) 		153.8
(-3) 		340.3
(3) 		187

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 463
1 2 3 4 5 6 range
A 187
(-2.1)
P 		148.2
(-3)
P 		225.6
(-1.1)
P 		213.1
(-1.4)
P 		288.6
(0.4)
P 		394
(3)
P 		246
B 129.6
(-3)
P 		203.7
(-1.7)
P 		164.3
(-2.4)
P 		158.4
(-2.5)
P 		341.2
(0.6)
P 		482.3
(3)
P 		353
C 105.9
(-3)
P 		189.3
(-1.9)
P 		188
(-1.9)
P 		298.1
(-0.5)
P 		242.5
(-1.2)
P 		568.5
(3)
P 		463
avr 140.8
(-3) 		180.4
(-2.3) 		192.6
(-2.1) 		223.2
(-1.5) 		290.8
(-0.4) 		481.6
(3) 		341
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 62.4
(3)
P 		36.5
(-3)
P 		40.4
(-2.1)
P 		53.8
(1)
P 		26
B 61
(3)
P 		39.7
(-2.8)
P 		39
(-3)
P 		53.4
(0.9)
P 		22
C 73.4
(3)
P 		51
(-2.3)
P 		48.2
(-3)
P 		68
(1.7)
P 		25
avr 65.6
(3) 		42.4
(-3) 		42.5
(-3) 		58.4
(1.1) 		23

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 156
1 2 3 4 5 6 range
A 34.5
(-3)
P 		52.7
(-1.2)
P 		49.1
(-1.6)
P 		54
(-1.1)
P 		87.1
(2.1)
P 		95.9
(3)
P 		61
B 45.1
(-2.8)
P 		67.8
(-1.8)
P 		39.9
(-3)
P 		42
(-2.9)
P 		138.6
(1.2)
P 		179.8
(3)
P 		140
C 39.2
(-3)
P 		57.8
(-2.3)
P 		47.8
(-2.7)
P 		59.9
(-2.2)
P 		78.5
(-1.4)
P 		190.3
(3)
P 		151
avr 39.6
(-3) 		59.4
(-2) 		45.6
(-2.7) 		52
(-2.4) 		101.4
(0.2) 		155.3
(3) 		116
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177340_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.11345
Sequence Type Exemplar sequence
Representative Public ID CD4.7 NCBI
Target Description CD4.7 /REP_DB=WormBase Gene ID /WP=CE16955 /TR=O44161 /GB=AAB88345.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_072076
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000006234 ENSEMBL cdna:SNAP chromosome:CEL140:V:5598341:5599071:-1 11/11 None
GENEFINDER00000006242 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:5598341:5599071:-1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_072076 8/11 Cross Hyb Matching Probes None
CD4.7 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:5598340-5599278(-) 97.1 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE64605 Hypothetical protein CBG09361 [Caenorhabditis briggsae] 4.0E-80
blast NP_504477 CD4.7 [Caenorhabditis elegans] gb|AAB88345.2| Hypothetical protein CD4.7 [Caenorhabditis elegans] 4.0E-47
blast XP_391822 PREDICTED: similar to ENSANGP00000018539 [Apis mellifera] 8.0E-30
Protein Domains
Database ID Description E-Value
Pfam IPR007529 EMBL-EBI HIT Zn-finger 7.7E-12
Sequence
Target Sequence 
>C. ELEGANS:177340_AT
tccttcacgaaaacctgctgcaacagccaatcaacttcgtgcttcctccagaatatcaaa
tctcgaaggaaatcggactcttgatgaaaatgcgcgaagaaacagaaggaatcgacagct
ggatggcctagagcaagataattctcatgatgatccacatgcaaatcttgtctggaataa
aaacgccccaaagttcgacgatgaaatgatcggtggtccgtctgcgaaaaaagctaaaaa
agtgaaagaagataagtcaggaattgttcatggtgaaaaagcgcgtcgacgaaaactcgc
ccgtccggagtttaataagcaacgattcaaaaaatcgttcaatgcacatgtaatcgagca
gagcaaggcaattttagactcagcagagccggattatcgacgagtgaatgcttatcaact
aagctcagcacctccttctgaaaaacctgcaagaaagttctgtgcagtttgcggcattat
ttccaagtactgttgtacgcgatgtggtgccaaatattgctcacttccatgtcgagacgt
gc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCCTTCACGAAAACCTGCTGCAACA 523 591 228 Antisense
AACAGCCAATCAACTTCGTGCTTCC 321 137 249 Antisense
GGAATCGACAGCTGGATGGCCTAGA 63 533 335 Antisense
AATGATCGGTGGTCCGTCTGCGAAA 78 165 432 Antisense
TCGCCCGTCCGGAGTTTAATAAGCA 21 587 524 Antisense
GACTCAGCAGAGCCGGATTATCGAC 686 373 604 Antisense
AGCACCTCCTTCTGAAAAACCTGCA 262 77 654 Antisense
GAAAGTTCTGTGCAGTTTGCGGCAT 314 361 680 Antisense
TGCGGCATTATTTCCAAGTACTGTT 59 581 697 Antisense
GTACTGTTGTACGCGATGTGGTGCC 309 459 714 Antisense
TGCTCACTTCCATGTCGAGACGTGC 694 579 745 Antisense
Sequence Source Affymetrix Proprietary Database