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[177339_at]

Description R102.6 /REP_DB=WormBase Gene ID /WP=CE06334 /TR=Q21892 /GB=CAA94360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 96      6grp_high1_10_10 > 69      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 91      6grp_total > 59      4grp_total > 18      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 252
1 2 3 4 range
A 107
(-3)
P 		165.5
(-1.6)
P 		183.5
(-1.2)
P 		358.6
(3)
P 		252
B 146.1
(-1.2)
P 		215.9
(2.5)
P 		112.7
(-3)
P 		226
(3)
P 		113
C 145.4
(-3)
P 		219.4
(-0.8)
P 		159.2
(-2.6)
P 		344.9
(3)
P 		200
avr 132.8
(-3) 		200.3
(-0.7) 		151.8
(-2.4) 		309.8
(3) 		177

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 105
1 2 3 4 5 6 range
A 275
(3)
P 		170.5
(-3)
P 		246.5
(1.4)
P 		247
(1.4)
P 		231.7
(0.5)
P 		236.8
(0.8)
P 		105
B 215
(-0.8)
P 		258
(2.7)
P 		188.5
(-3)
P 		222.3
(-0.2)
P 		247.9
(1.9)
P 		261.9
(3)
P 		73
C 221.6
(0.2)
P 		241.1
(1.5)
P 		172.5
(-3)
P 		201.2
(-1.1)
P 		208.8
(-0.6)
P 		264.8
(3)
P 		92
avr 237.2
(1) 		223.2
(-0.6) 		202.5
(-3) 		223.5
(-0.6) 		229.5
(0.1) 		254.5
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 37
1 2 3 4 range
A 39
(-1.9)
P 		35.9
(-3)
P 		48
(1.4)
P 		52.5
(3)
P 		17
B 46.6
(1.5)
P 		53.3
(3)
P 		26.1
(-3)
P 		48.2
(1.9)
P 		27
C 48.1
(-3)
P 		63.1
(3)
P 		55.5
(-0)
P 		58.1
(1)
P 		15
avr 44.6
(-2.1) 		50.8
(1.7) 		43.2
(-3) 		52.9
(3) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 50.7
(-3)
P 		60.7
(0.1)
P 		53.7
(-2.1)
P 		62.6
(0.7)
P 		69.9
(3)
P 		57.6
(-0.8)
P 		19
B 74.8
(0.2)
P 		85.9
(1.4)
P 		45.8
(-3)
P 		58.9
(-1.6)
P 		100.7
(3)
P 		97.7
(2.7)
P 		55
C 82.2
(2.2)
P 		73.6
(1.1)
P 		43.9
(-2.6)
P 		40.5
(-3)
P 		67.6
(0.4)
P 		88.6
(3)
P 		48
avr 69.2
(0.8) 		73.4
(1.6) 		47.8
(-3) 		54
(-1.9) 		79.4
(2.7) 		81.3
(3) 		34
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177339_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.8906
Sequence Type Exemplar sequence
Representative Public ID R102.6 NCBI
Target Description R102.6 /REP_DB=WormBase Gene ID /WP=CE06334 /TR=Q21892 /GB=CAA94360.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069581(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069581 NCBI Caenorhabditis elegans R102.6 (R102.6) mRNA, complete cds. 11/11 None
R102.6 ENSEMBL cdna:known chromosome:CEL140:IV:10698433:10701335:-1 gene:R102.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034333 3/11 Cross Hyb Matching Probes None
SNAP00000034334 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034345 6/11 Cross Hyb Matching Probes None
GENEFINDER00000034349 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:10698438-10701341(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R102.6
Entrez Gene 187892 Entrez gene
SwissProt Q21892 EMBL-EBI
WormBase CE06334 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA94360 Hypothetical protein R102.6 [Caenorhabditis elegans] ref|NP_501982.1| R102.6 [Caenorhabditis elegans] 1.0E-108
blast CAE70854 Hypothetical protein CBG17639 [Caenorhabditis briggsae] 7.0E-92
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501982.1 5 56-78,88-110,117-139,159-181,202-224
R102.6 5 56-78,88-110,117-139,159-181,202-224
Sequence
Target Sequence 
>C. ELEGANS:177339_AT
gattccatacttcacagtttgcgtcttattcatttttgtactcattctccatcttttcgt
cgatttcctcgacactgccaattcgaaaaataccgtcgaaatgcagtcaatccttcataa
tactgttttgttatttatgatttgcttcgaagtttatatgttgtctgtcgtttggcgggc
gttcgtctacatttgcgatttcaatatgcaacggcagattgagaaaattgtgcaaaaaaa
aaatatgaatctgatctttttactattcacttttcccatcttcgtagacaattttttgtt
tggtttcggaggcggtggcggatgcggatgtggaagttcctgtggtggatgtaacatggg
atgctcctgcctaccacctcccccttctccagtatgtatgccacctccacctccaccgtg
cccgatgccaatcccgtgtccacctcctccgcctgcctgctcgtgcccgccaccggtaac
catgtatcagccctgtatggttcctcaatacgttcctcgatgcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTCCATACTTCACAGTTTGCGTC 208 433 366 Antisense
TCATTTTTGTACTCATTCTCCATCT 52 621 395 Antisense
ATTTCCTCGACACTGCCAATTCGAA 657 15 428 Antisense
TACCGTCGAAATGCAGTCAATCCTT 266 649 456 Antisense
TTATATGTTGTCTGTCGTTTGGCGG 451 679 519 Antisense
GGCGTTCGTCTACATTTGCGATTTC 444 539 543 Antisense
CACTTTTCCCATCTTCGTAGACAAT 311 195 633 Antisense
TGTAACATGGGATGCTCCTGCCTAC 327 559 715 Antisense
CGCCACCGGTAACCATGTATCAGCC 44 259 833 Antisense
ATGTATCAGCCCTGTATGGTTCCTC 616 47 847 Antisense
TCCTCAATACGTTCCTCGATGCAGT 304 591 867 Antisense
Sequence Source Affymetrix Proprietary Database