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[177337_at]

Description R52.2 /REP_DB=WormBase Gene ID /WP=CE12826 /TR=O17296 /GB=AAB71060.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 19      6grp_total_sub > Increase      6grp_rule_based > S5      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 5.3
(-1.9)
A 		4
(-2.4)
A 		2.6
(-3)
A 		17.6
(3)
A 		15
B 1.8
(-3)
A 		3.4
(3)
A 		2.7
(0.4)
A 		2.4
(-0.8)
A 		2
C 3.4
(-1.1)
A 		5.8
(3)
A 		3.4
(-1.1)
A 		2.3
(-3)
A 		4
avr 3.5
(-2.2) 		4.4
(-1) 		2.9
(-3) 		7.4
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 8.2
(-2.4)
A 		2.4
(-3)
A 		3.9
(-2.8)
A 		3.7
(-2.9)
A 		59.3
(3)
A 		34.4
(0.4)
A 		57
B 2.4
(-3)
A 		2.4
(-3)
A 		6.8
(-2.6)
A 		2.9
(-3)
A 		40.8
(0.7)
A 		64.1
(3)
A 		62
C 6.5
(-2.8)
A 		5.3
(-3)
A 		7
(-2.8)
A 		4.9
(-3)
A 		68.2
(3)
A 		61.9
(2.4)
A 		63
avr 5.7
(-2.7) 		3.4
(-3) 		5.9
(-2.7) 		3.8
(-3) 		56.1
(3) 		53.5
(2.7) 		53
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.9
(0.8)
A 		0.9
(-2.4)
A 		0.7
(-3)
A 		2.6
(3)
A 		2
B 0.6
(-1)
A 		0.8
(3)
A 		0.6
(-1)
A 		0.5
(-3)
A 		0
C 1.1
(0.2)
A 		1.7
(3)
A 		1.2
(0.7)
A 		0.4
(-3)
A 		1
avr 1.2
(3) 		1.1
(1.5) 		0.8
(-3) 		1.2
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 23
1 2 3 4 5 6 range
A 1.5
(-2.8)
A 		0.9
(-3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		17.9
(3)
A 		8.4
(-0.4)
A 		17
B 0.8
(-3)
A 		0.8
(-3)
A 		1.7
(-2.8)
A 		0.8
(-3)
A 		16.6
(1.1)
A 		23.9
(3)
A 		23
C 2.4
(-2.6)
A 		1.6
(-2.8)
A 		1.8
(-2.8)
A 		1
(-3)
A 		22.1
(3)
A 		20.7
(2.6)
A 		21
avr 1.6
(-2.8) 		1.1
(-2.9) 		1.5
(-2.8) 		0.9
(-3) 		18.9
(3) 		17.7
(2.6) 		18
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177337_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4424
Sequence Type Exemplar sequence
Representative Public ID R52.2 NCBI
Target Description R52.2 /REP_DB=WormBase Gene ID /WP=CE12826 /TR=O17296 /GB=AAB71060.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061790(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061790 NCBI Caenorhabditis elegans R52.2 (R52.2) mRNA, complete cds. 11/11 None
SNAP00000034569 ENSEMBL cdna:SNAP chromosome:CEL140:II:2125628:2128687:1 11/11 None
GENEFINDER00000034574 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2125628:2128687:1 11/11 None
R52.2 ENSEMBL cdna:known chromosome:CEL140:II:2125628:2128687:1 gene:R52.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Public Domain and Genome References
Gene Title
Ensembl R52.2
Entrez Gene 173568 Entrez gene
SwissProt O17296 EMBL-EBI
WormBase CE12826 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71060 Hypothetical protein R52.2 [Caenorhabditis elegans] ref|NP_494191.1| R52.2 [Caenorhabditis elegans] 0.0
blast AAF36060 Hypothetical protein Y75D11A.5 [Caenorhabditis elegans] ref|NP_508324.1| Y75D11A.5 [Caenorhabditis elegans] 0.0
blast CAE57029 Hypothetical protein CBG24906 [Caenorhabditis briggsae] 1.0E-116
Protein Domains
Database ID Description E-Value
Pfam IPR005312 EMBL-EBI Eukaryotic proteins of unknown function 3564 1.0E-126
Pfam IPR008737 EMBL-EBI Eukaryotic proteins of unknown function 5585 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177337_AT
gacgaatttcaaccatcttatcagagacaatatttatctcaccacccggtgataaagcct
acttccacatcaaccaaagtcagaatagtgtacgacggatctgccagagccacgaaaaca
tcgaaatcactcaacgccattctacacactggtgaatctctgctaccaaatcttactgga
gttctactacgcattcgacaaccttcaattctagtgagcagtgatttggaaaaagccttt
ctgcagttgggactccaccatgaagatcacgacttctgcaggttcttgtggcaaccctgg
aatccaggaacacaaagatatcaactaacacctcaatcaccaaagatcattcttcatgaa
ccttcaacttggaatgtactatcaatttggattcaatggaatcttggaaactcgaacaat
tatagactgccaatcaaacaagactccca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACGAATTTCAACCATCTTATCAGA 557 379 2545 Antisense
CACCACCCGGTGATAAAGCCTACTT 591 199 2584 Antisense
TAGTGTACGACGGATCTGCCAGAGC 572 653 2630 Antisense
AAACATCGAAATCACTCAACGCCAT 474 127 2660 Antisense
TCAACGCCATTCTACACACTGGTGA 550 631 2675 Antisense
GAATCTCTGCTACCAAATCTTACTG 243 329 2698 Antisense
TCTACTACGCATTCGACAACCTTCA 135 615 2727 Antisense
ATCACGACTTCTGCAGGTTCTTGTG 365 27 2810 Antisense
GGTTCTTGTGGCAACCCTGGAATCC 455 507 2825 Antisense
TCAACTAACACCTCAATCACCAAAG 457 629 2865 Antisense
GACTGCCAATCAAACAAGACTCCCA 621 373 2969 Antisense
Sequence Source Affymetrix Proprietary Database