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[177333_at]

Description M70.2 /REP_DB=WormBase Gene ID /WP=CE17194 /TR=O45186 /GB=AAC04436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 99      4grp_total > 17      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 134
1 2 3 4 range
A 3.2
(-2.8)
A 		2.5
(-3)
A 		20.6
(3)
A 		11
(-0.2)
A 		18
B 6.8
(-2.1)
A 		13.9
(-0.7)
A 		2.1
(-3)
A 		32.5
(3)
A 		30
C 4.5
(-3)
A 		38.6
(-1.5)
A 		21
(-2.3)
A 		136.5
(3)
A 		132
avr 4.8
(-3) 		18.3
(-1.5) 		14.6
(-1.9) 		60
(3) 		55

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 31
1 2 3 4 5 6 range
A 8
(-1.7)
A 		2.2
(-3)
A 		5.2
(-2.3)
A 		3
(-2.8)
A 		28
(3)
A 		22.5
(1.7)
A 		26
B 10.1
(-1.7)
A 		14
(-0.9)
A 		33.2
(3)
A 		3.7
(-3)
A 		5.6
(-2.6)
A 		14
(-0.9)
A 		30
C 26.8
(3)
A 		9.5
(-1.2)
A 		2
(-3)
A 		6.1
(-2)
A 		24.2
(2.4)
A 		9.9
(-1.1)
A 		25
avr 15
(1.3) 		8.6
(-1.3) 		13.5
(0.7) 		4.3
(-3) 		19.3
(3) 		15.5
(1.5) 		15
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 23
1 2 3 4 range
A 1.2
(-2.1)
A 		0.5
(-3)
A 		5.4
(3)
A 		1.6
(-1.7)
A 		5
B 2.2
(-1.4)
A 		3.4
(-0.3)
A 		0.5
(-3)
A 		6.9
(3)
A 		6
C 1.5
(-3)
A 		11.1
(-0.3)
A 		7.3
(-1.4)
A 		23
(3)
A 		22
avr 1.6
(-3) 		5
(-0.7) 		4.4
(-1.1) 		10.5
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 1.5
(-2.5)
A 		0.8
(-3)
A 		1.1
(-2.8)
A 		0.8
(-3)
A 		8.5
(3)
A 		5.5
(0.7)
A 		8
B 3.5
(-0.9)
A 		4.7
(0.1)
A 		8.1
(3)
A 		1
(-3)
A 		2.3
(-1.9)
A 		5.2
(0.5)
A 		7
C 9.9
(3)
A 		2.9
(-1.5)
A 		0.5
(-3)
A 		1.2
(-2.6)
A 		7.8
(1.7)
A 		3.3
(-1.2)
A 		9
avr 5
(1.6) 		2.8
(-0.9) 		3.2
(-0.5) 		1
(-3) 		6.2
(3) 		4.7
(1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177333_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10449
Sequence Type Exemplar sequence
Representative Public ID M70.2 NCBI
Target Description M70.2 /REP_DB=WormBase Gene ID /WP=CE17194 /TR=O45186 /GB=AAC04436.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067780(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067780 NCBI Caenorhabditis elegans M70.2 (M70.2) mRNA, complete cds. 11/11 None
SNAP00000012655 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2243059:2246214:1 10/11 None
GENEFINDER00000012658 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2243059:2243698:1 11/11 None
M70.2 ENSEMBL cdna:known chromosome:CEL140:IV:2243059:2243698:1 gene:M70.2 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2243064-2243704(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M70.2
Entrez Gene 187468 Entrez gene
SwissProt O45186 EMBL-EBI
WormBase CE17194 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04436 Hypothetical protein M70.2 [Caenorhabditis elegans] ref|NP_500181.1| M70.2 [Caenorhabditis elegans] 4.0E-80
blast AAC04436 Hypothetical protein M70.2 [Caenorhabditis elegans] ref|NP_500181.1| M70.2 [Caenorhabditis elegans] 3.0E-72
blast CAB00109 Hypothetical protein F58H1.6 [Caenorhabditis elegans] ref|NP_505999.1| F58H1.6 [Caenorhabditis elegans] 7.0E-59
blast CAB00109 Hypothetical protein F58H1.6 [Caenorhabditis elegans] ref|NP_505999.1| F58H1.6 [Caenorhabditis elegans] 2.0E-52
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500181.1 1 4-21
M70.2 1 4-21
SNAP00000012655 1 4-21
GENEFINDER00000012658 1 4-21
Sequence
Target Sequence 
>C. ELEGANS:177333_AT
ctatcattacaacattgttcacctggctcatttgtttctttttgtggtacgcttcgcgtc
gttttgagaagaagaagattcactatcctagtagaagacaacggtttgtggattatctca
ttaatgcacagcgatcggaaaaattggaactacattctcaacaacaatttggaaatagac
acttgggatgtgacgagttggtcaagtcggagaatcgggagaaagccaaaagtacaaaga
agaaagaaaaggtcaagtcagagaaaatgaaaaaagcaacagcaaccactggtgctggat
caactatagatcagagttcaaaggatcccacaagaactactatggcatctgaaagaggaa
tgacaatgacccagagagtccaaaaagaaaaatcaattaaaaagacgaactcagaactga
aagctgcagctgacaatcagacggttacccagggaaatgacacgacaactacgcaaggac
catcgtcactgtttcctgccgatttatccaaaaaagacagactgagattgcaaaaagtta
aggagcgtgcggtggcagcacct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTATCATTACAACATTGTTCACCTG 180 225 17 Antisense
ACCTGGCTCATTTGTTTCTTTTTGT 69 89 37 Antisense
CTTTTTGTGGTACGCTTCGCGTCGT 681 221 54 Antisense
GACACTTGGGATGTGACGAGTTGGT 167 349 194 Antisense
GCAACCACTGGTGCTGGATCAACTA 307 319 298 Antisense
AAAGGATCCCACAAGAACTACTATG 124 181 336 Antisense
GAATGACAATGACCCAGAGAGTCCA 677 329 374 Antisense
GGTTACCCAGGGAAATGACACGACA 218 503 459 Antisense
ACACGACAACTACGCAAGGACCATC 371 109 476 Antisense
CAAGGACCATCGTCACTGTTTCCTG 686 183 490 Antisense
TAAGGAGCGTGCGGTGGCAGCACCT 567 635 555 Antisense
Sequence Source Affymetrix Proprietary Database