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[177330_s_at]

Description M176.5 /REP_DB=WormBase Gene ID /WP=CE18088 /TR=Q21548 /GB=CAB01654.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 80      4grp_total > 05      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 147
1 2 3 4 range
A 29.3
(-2.7)
A 		26.5
(-3)
A 		37.5
(-1.7)
A 		77.8
(3)
A 		51
B 10.7
(-3)
A 		21.8
(3)
A 		21.7
(2.9)
A 		10.9
(-2.9)
A 		11
C 103.7
(0.9)
A 		21.9
(-2.4)
A 		7.2
(-3)
A 		154.6
(3)
A 		147
avr 47.9
(-0.4) 		23.4
(-2.9) 		22.1
(-3) 		81.1
(3) 		59

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 94
1 2 3 4 5 6 range
A 23
(-1.6)
A 		13.5
(-2.6)
A 		25.8
(-1.3)
A 		31.7
(-0.6)
A 		10.3
(-3)
A 		64.7
(3)
A 		54
B 22.5
(2.5)
A 		23.7
(3)
A 		10.3
(-2.5)
A 		23.7
(3)
A 		9.2
(-3)
A 		11.1
(-2.2)
A 		15
C 17.4
(-2.3)
A 		23
(-1.9)
A 		26.8
(-1.7)
A 		99.4
(3)
A 		16.8
(-2.3)
A 		5.9
(-3)
A 		94
avr 21
(-1.6) 		20.1
(-1.8) 		21
(-1.6) 		51.6
(3) 		12.1
(-3) 		27.2
(-0.7) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 32
1 2 3 4 range
A 10.7
(2.3)
A 		5.8
(-3)
A 		9.8
(1.3)
A 		11.4
(3)
A 		6
B 3.4
(-0.9)
A 		5.4
(3)
A 		5
(2.2)
A 		2.3
(-3)
A 		3
C 34.3
(3)
A 		6.3
(-2.3)
A 		2.5
(-3)
A 		26.1
(1.5)
A 		32
avr 16.1
(3) 		5.8
(-3) 		5.8
(-3) 		13.3
(1.4) 		10

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 18
1 2 3 4 5 6 range
A 4.2
(-2.5)
A 		4.8
(-2.2)
A 		5.6
(-1.8)
A 		8
(-0.7)
A 		3.1
(-3)
A 		15.8
(3)
A 		13
B 7.8
(2.9)
A 		7.9
(3)
A 		2.5
(-3)
A 		6.3
(1.2)
A 		3.8
(-1.6)
A 		4.1
(-1.2)
A 		5
C 6.4
(-1.5)
A 		7
(-1.3)
A 		6.8
(-1.4)
A 		20
(3)
A 		5.4
(-1.9)
A 		2
(-3)
A 		18
avr 6.1
(-1.4) 		6.6
(-0.9) 		5
(-2.3) 		11.4
(3) 		4.1
(-3) 		7.3
(-0.4) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177330_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2892
Sequence Type Exemplar sequence
Representative Public ID M176.5 NCBI
Target Description M176.5 /REP_DB=WormBase Gene ID /WP=CE18088 /TR=Q21548 /GB=CAB01654.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063613(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063613 NCBI Caenorhabditis elegans M176.10 (M176.10) mRNA, complete cds. 11/11 None
GENEFINDER00000025011 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:9423288:9426084:-1 11/11 None
M176.10 ENSEMBL cdna:known chromosome:CEL140:II:9423242:9426084:-1 gene:M176.10 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000025004 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:9423284-9427593(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M176.10
Entrez Gene 174496 Entrez gene
SwissProt Q8WQD9 EMBL-EBI
WormBase CE28946 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD21655 Hypothetical protein M176.10 [Caenorhabditis elegans] ref|NP_496014.1| M176.10 [Caenorhabditis elegans] 0.0
blast CAE67812 Hypothetical protein CBG13392 [Caenorhabditis briggsae] 7.0E-33
Sequence
Target Sequence 
>C. ELEGANS:177330_S_AT
taaaaaatatgctaccgctcgcccacacaaagttgcaaaggcagttgcgcaacgaggtct
gccaggatttccacgcaagaagagagacatcgctgcgacggttgtcggcgccgcagtcag
tagtgttgtctcgaatttgatgaaaaatgtggaagagagtgttgtgaaagcgaacgagca
ggcaagcaaggtgacagccgatgttgtcgattcatcgcacggatcgattttgggatccgg
cgaaatttcactcatatcaaatgacgctatccaacaccaactcgcaccacaggttgttca
agctgctccagtttcgaatgaagccgtgccaaagccgttcgctccagtcaacccaatcca
tgcagatatagaggtcattgttggaaataccaatgctactacgattacctcaactgttgc
accaattcctccaaagaaaggtttcttctctacactttttggttctttcaagaacttgtt
cggaaccgtcaccaactccattggcggattct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TAAAAAATATGCTACCGCTCGCCCA 52 641 1290 Antisense
GCAGTTGCGCAACGAGGTCTGCCAG 576 311 1330 Antisense
GTCTGCCAGGATTTCCACGCAAGAA 400 471 1346 Antisense
CCGCAGTCAGTAGTGTTGTCTCGAA 224 261 1400 Antisense
TTGGGATCCGGCGAAATTTCACTCA 440 701 1519 Antisense
TCAAATGACGCTATCCAACACCAAC 407 629 1546 Antisense
ACCACAGGTTGTTCAAGCTGCTCCA 345 85 1575 Antisense
CGAATGAAGCCGTGCCAAAGCCGTT 404 251 1604 Antisense
CAGTCAACCCAATCCATGCAGATAT 403 207 1634 Antisense
TTTCTTCTCTACACTTTTTGGTTCT 512 669 1731 Antisense
GTCACCAACTCCATTGGCGGATTCT 473 465 1777 Antisense
Sequence Source Affymetrix Proprietary Database