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[177329_at]

Description R52.4 /REP_DB=WormBase Gene ID /WP=CE12830 /TR=O17289 /GB=AAB71062.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 115
1 2 3 4 range
A 13.7
(-2.4)
A 		8.9
(-3)
A 		22.2
(-1.4)
A 		59.7
(3)
A 		51
B 33.7
(3)
A 		19.3
(0.2)
A 		5.4
(-2.5)
A 		2.8
(-3)
A 		31
C 3.8
(-3)
A 		4
(-3)
A 		11.6
(-2.6)
A 		118.1
(3)
A 		114
avr 17.1
(-2.2) 		10.7
(-3) 		13.1
(-2.7) 		60.2
(3) 		50

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 16.6
(-1.7)
A 		18.1
(-1.5)
A 		11.5
(-2.6)
A 		45.2
(3)
A 		29.6
(0.4)
A 		9
(-3)
A 		36
B 21.9
(3)
A 		10.5
(-0.5)
A 		3.7
(-2.7)
A 		5.7
(-2)
A 		20
(2.4)
A 		2.6
(-3)
A 		19
C 5.9
(-3)
A 		21.6
(3)
A 		6
(-3)
A 		13.3
(-0.2)
A 		21.3
(2.9)
A 		15
(0.5)
A 		16
avr 14.8
(-0.2) 		16.7
(0.5) 		7.1
(-3) 		21.4
(2.2) 		23.6
(3) 		8.9
(-2.3) 		17
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 5
(-0.3)
A 		1.9
(-3)
A 		5.8
(0.4)
A 		8.7
(3)
A 		7
B 10.8
(3)
A 		4.8
(-0.5)
A 		1.2
(-2.6)
A 		0.6
(-3)
A 		10
C 1.2
(-3)
A 		1.1
(-3)
A 		4
(-2.1)
A 		19.9
(3)
A 		19
avr 5.7
(-0.4) 		2.6
(-3) 		3.7
(-2.1) 		9.7
(3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 3.1
(-2.4)
A 		6.4
(-0.3)
A 		2.5
(-2.8)
A 		11.5
(3)
A 		8.9
(1.3)
A 		2.2
(-3)
A 		9
B 7.6
(2.6)
A 		3.5
(-0.8)
A 		0.9
(-3)
A 		1.5
(-2.5)
A 		8.1
(3)
A 		1
(-2.9)
A 		7
C 2.2
(-2.2)
A 		6.6
(2.7)
A 		1.5
(-3)
A 		2.7
(-1.7)
A 		6.9
(3)
A 		5
(0.9)
A 		5
avr 4.3
(-0.5) 		5.5
(0.7) 		1.6
(-3) 		5.2
(0.4) 		8
(3) 		2.7
(-2) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177329_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.4675
Sequence Type Exemplar sequence
Representative Public ID R52.4 NCBI
Target Description R52.4 /REP_DB=WormBase Gene ID /WP=CE12830 /TR=O17289 /GB=AAB71062.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061782 NCBI Caenorhabditis elegans R52.4 (R52.4) mRNA, complete cds. 11/11 None
SNAP00000034563 ENSEMBL cdna:SNAP chromosome:CEL140:II:2107353:2108396:-1 11/11 None
GENEFINDER00000034572 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:2107246:2108396:-1 11/11 None
R52.4 ENSEMBL cdna:known chromosome:CEL140:II:2107198:2108396:-1 gene:R52.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2107196-2108395(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R52.4
Entrez Gene 187878 Entrez gene
SwissProt O17289 EMBL-EBI
WormBase CE12830 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71062 Hypothetical protein R52.4 [Caenorhabditis elegans] ref|NP_494183.1| R52.4 [Caenorhabditis elegans] 1.0E-85
blast AAB71062 Hypothetical protein R52.4 [Caenorhabditis elegans] ref|NP_494183.1| R52.4 [Caenorhabditis elegans] 1.0E-82
blast AAB71062 Hypothetical protein R52.4 [Caenorhabditis elegans] ref|NP_494183.1| R52.4 [Caenorhabditis elegans] 2.0E-74
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 3.0E-24
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 4.0E-24
blast AAK31517 C-type lectin protein 19 [Caenorhabditis elegans] ref|NP_494066.1| C-type LECtin family member (clec-19) [Caenorhabditis elegans] 8.0E-24
blast AAD12802 Hypothetical protein K07G6.1 [Caenorhabditis elegans] ref|NP_494065.1| K07G6.1 [Caenorhabditis elegans] 8.0E-13
blast AAD12802 Hypothetical protein K07G6.1 [Caenorhabditis elegans] ref|NP_494065.1| K07G6.1 [Caenorhabditis elegans] 2.0E-12
Sequence
Target Sequence 
>C. ELEGANS:177329_AT
gagttatctgtctacattcacatttattactttgctaataattctatcaaatgggtgtat
gcgaacaattccgcctgatgaagcttacatctcgagtaccatgtcttacgaggacactac
tccaggaagtccaggtacctctgaggcgaccacccctgctacggtgttgccctgccaaca
atgtgatgtagtgagcatagtcaagactcctgctcatggttcccgtgtagtaccgacaac
ttggactgagaccgcaccaaccgctgaaggttgcctacagtacgaagcctattttgaggc
gcctacgggaaactattgcggc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGTTATCTGTCTACATTCACATTT 307 399 15 Antisense
TGAAGCTTACATCTCGAGTACCATG 174 575 93 Antisense
GTCTTACGAGGACACTACTCCAGGA 346 469 117 Antisense
AAGTCCAGGTACCTCTGAGGCGACC 301 159 141 Antisense
GTTGCCCTGCCAACAATGTGATGTA 147 441 180 Antisense
ATAGTCAAGACTCCTGCTCATGGTT 12 23 211 Antisense
CTCATGGTTCCCGTGTAGTACCGAC 705 223 227 Antisense
CGACAACTTGGACTGAGACCGCACC 563 251 248 Antisense
GGTTGCCTACAGTACGAAGCCTATT 234 507 283 Antisense
GAAGCCTATTTTGAGGCGCCTACGG 268 343 298 Antisense
GGCGCCTACGGGAAACTATTGCGGC 375 539 312 Antisense
Sequence Source Affymetrix Proprietary Database