[Home] | [Total List]

[177328_at]

Description Y37E11AL.L /REP_DB=WormBase Gene ID /WP=CE26066 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59455.1
Cluster 6grp_total > 0      4grp_total > 12      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 128
1 2 3 4 range
A 99.5
(0.1)
P 		85
(-0.8)
A 		49.2
(-3)
A 		145.9
(3)
A 		97
B 70
(-0.4)
P 		60.7
(-1.1)
A 		36.6
(-3)
A 		114.1
(3)
P 		78
C 63.8
(-1.6)
A 		48
(-2.3)
A 		33.8
(-3)
A 		161.5
(3)
P 		128
avr 77.8
(-0.7) 		64.6
(-1.5) 		39.9
(-3) 		140.5
(3) 		101

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 70
1 2 3 4 5 6 range
A 55.3
(-3)
A 		110.3
(3)
P 		74.9
(-0.9)
A 		76.7
(-0.7)
A 		59.6
(-2.5)
P 		59.3
(-2.6)
A 		55
B 39.9
(-3)
A 		67.8
(1.5)
P 		63
(0.7)
A 		61.4
(0.5)
P 		47.3
(-1.8)
A 		77
(3)
P 		37
C 57.8
(-3)
P 		78.5
(0.5)
M 		65.1
(-1.8)
A 		85.9
(1.7)
A 		67.9
(-1.3)
P 		93.3
(3)
A 		36
avr 51
(-3) 		85.5
(3) 		67.7
(-0.1) 		74.7
(1.1) 		58.3
(-1.7) 		76.5
(1.4) 		35
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 28
1 2 3 4 range
A 36.2
(3)
P 		18.5
(-1.6)
A 		12.9
(-3)
A 		21.4
(-0.8)
A 		23
B 22.3
(2.2)
P 		15
(-0.5)
A 		8.5
(-3)
A 		24.3
(3)
P 		16
C 21.1
(0.6)
A 		13.8
(-2.2)
A 		11.8
(-3)
A 		27.2
(3)
P 		15
avr 26.5
(3) 		15.8
(-1.2) 		11.1
(-3) 		24.3
(2.1) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.2
(-3)
A 		39.2
(3)
P 		16.3
(-1.7)
A 		19.5
(-1.1)
A 		18
(-1.4)
P 		14.4
(-2.1)
A 		29
B 13.9
(-3)
A 		22.6
(0.5)
P 		15.3
(-2.4)
A 		16.3
(-2)
P 		19.2
(-0.9)
A 		28.7
(3)
P 		15
C 21.4
(-1)
P 		24
(0)
M 		16.6
(-3)
A 		17.3
(-2.7)
A 		22
(-0.8)
P 		31.2
(3)
A 		15
avr 15.2
(-3) 		28.6
(3) 		16.1
(-2.6) 		17.7
(-1.9) 		19.7
(-1) 		24.8
(1.3) 		13
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177328_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19311
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.L NCBI
Target Description Y37E11AL.L /REP_DB=WormBase Gene ID /WP=CE26066 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59455.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068000(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068000 NCBI Caenorhabditis elegans Y37E11AL.1 (Y37E11AL.1) mRNA, complete cds. 11/11 None
SNAP00000035937 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3712677:3715350:1 11/11 None
GENEFINDER00000035942 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3709504:3715356:1 11/11 None
Y37E11AL.1 ENSEMBL cdna:known chromosome:CEL140:IV:3709510:3715356:1 gene:Y37E11AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3709515-3715362(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.1
Entrez Gene 177132 Entrez gene
SwissProt Q9N441 EMBL-EBI
WormBase CE26066 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59455 Hypothetical protein Y37E11AL.1 [Caenorhabditis elegans] ref|NP_500401.1| Y37E11AL.1 [Caenorhabditis elegans] 0.0
blast CAE63760 Hypothetical protein CBG08295 [Caenorhabditis briggsae] 0.0
blast AAF59455 Hypothetical protein Y37E11AL.1 [Caenorhabditis elegans] ref|NP_500401.1| Y37E11AL.1 [Caenorhabditis elegans] 1.0E-139
blast CAE63760 Hypothetical protein CBG08295 [Caenorhabditis briggsae] 1.0E-133
blast CAE67977 Hypothetical protein CBG13583 [Caenorhabditis briggsae] 1.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500401.1 6 20-42,55-77,103-122,142-164,189-211,250-272
Y37E11AL.1 6 20-42,55-77,103-122,142-164,189-211,250-272
SNAP00000035937 3 24-46,71-93,132-154
GENEFINDER00000035942 6 22-44,57-79,105-124,144-166,191-213,252-274
Sequence
Target Sequence 
>C. ELEGANS:177328_AT
gagctcggccatatggggtggctccactcactagcgatttttctcccattcttcacacta
atctttcttaatggaggaattgttcgaatgctccggaaacagaatgttcaacagctccgg
agcctgattgcagagctcactttgggacacgacctgtcgaaaattcggaaaaagaacttg
agaagtgcaacgaggaccctgattgttatcatctcggcgtatttgatttcgaacttgctc
agcttgattttgatcattgtagagtactttaatccggattacctccacgtctaccatcct
gacttaaaccgcctggcaaccgactctgcagctcttctgacagtagtcggaaatgcgatt
cgatgccccgctcatattttcagcaattctgaaattcgaacacaatttcgaataatgtta
tgtggcgagagagagaaaaaggtagtgaaaaagctctcggaacgccgccgaacacaggag
aagctcgacaatccgtggatggctctgatgtgggtttcagccaataatcaggcgtctgat
gatgataaagccgcatttatgccacgtgcatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAGCTCGGCCATATGGGGTGGCTCC 656 385 562 Antisense
TCAACAGCTCCGGAGCCTGATTGCA 19 631 669 Antisense
GATTGCAGAGCTCACTTTGGGACAC 109 435 687 Antisense
GGACCCTGATTGTTATCATCTCGGC 541 523 755 Antisense
CCACGTCTACCATCCTGACTTAAAC 323 275 846 Antisense
TGACTTAAACCGCCTGGCAACCGAC 677 569 861 Antisense
ACTCTGCAGCTCTTCTGACAGTAGT 403 99 884 Antisense
AACGCCGCCGAACACAGGAGAAGCT 569 143 1022 Antisense
AGAAGCTCGACAATCCGTGGATGGC 189 75 1040 Antisense
CGTGGATGGCTCTGATGTGGGTTTC 46 245 1055 Antisense
AAGCCGCATTTATGCCACGTGCATT 449 149 1109 Antisense
Sequence Source Affymetrix Proprietary Database