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[177326_at]

Description Y37E11AL.B /REP_DB=WormBase Gene ID /WP=CE26061 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59445.1
Cluster 6grp_total > 44      4grp_total > 42      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 14
1 2 3 4 range
A 3.2
(-3)
A 		11.9
(2.4)
A 		7.9
(-0.1)
A 		12.9
(3)
A 		10
B 5.9
(-2.5)
A 		16.8
(3)
A 		7.9
(-1.5)
A 		4.8
(-3)
A 		12
C 2.7
(-3)
A 		7.9
(1.3)
A 		10
(3)
A 		5
(-1.1)
A 		7
avr 3.9
(-3) 		12.2
(3) 		8.6
(0.4) 		7.6
(-0.3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 7
1 2 3 4 5 6 range
A 6.1
(0.6)
A 		6.9
(1.4)
A 		7.7
(2.3)
A 		2.7
(-3)
A 		7.4
(1.9)
A 		8.4
(3)
A 		6
B 6.4
(0.8)
A 		4.8
(-0.5)
A 		9
(3)
A 		1.9
(-3)
A 		4.4
(-0.9)
A 		5.9
(0.4)
A 		7
C 2.5
(-3)
A 		9.2
(3)
A 		4
(-1.7)
A 		3.3
(-2.3)
A 		5.8
(-0)
A 		3.5
(-2.1)
A 		7
avr 5
(0.3) 		7
(3) 		6.9
(2.9) 		2.6
(-3) 		5.9
(1.5) 		5.9
(1.5) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 3
1 2 3 4 range
A 1.2
(-3)
A 		2.6
(3)
A 		2.1
(0.9)
A 		1.9
(-0)
A 		1
B 1.9
(-1.3)
A 		4.2
(3)
A 		1.8
(-1.5)
A 		1
(-3)
A 		3
C 0.9
(-2.8)
A 		2.3
(0.3)
A 		3.5
(3)
A 		0.8
(-3)
A 		3
avr 1.3
(-2.7) 		3
(3) 		2.5
(1.3) 		1.2
(-3) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 1.1
(-1.7)
A 		2.5
(3)
A 		1.7
(0.3)
A 		0.7
(-3)
A 		2.2
(2)
A 		2
(1.3)
A 		2
B 2.2
(3)
A 		1.6
(0.9)
A 		2.2
(3)
A 		0.5
(-3)
A 		1.8
(1.6)
A 		2.2
(3)
A 		2
C 0.9
(-2.4)
A 		2.8
(3)
A 		1
(-2.1)
A 		0.7
(-3)
A 		1.9
(0.4)
A 		1.2
(-1.6)
A 		2
avr 1.4
(-0.2) 		2.3
(3) 		1.6
(0.5) 		0.6
(-3) 		2
(1.9) 		1.8
(1.2) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177326_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19206
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.B NCBI
Target Description Y37E11AL.B /REP_DB=WormBase Gene ID /WP=CE26061 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59445.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067999(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067999 NCBI Caenorhabditis elegans Y37E11AL.9 (Y37E11AL.9) mRNA, complete cds. 11/11 None
GENEFINDER00000035945 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3699799:3700632:-1 11/11 None
Y37E11AL.9 ENSEMBL cdna:known chromosome:CEL140:IV:3699799:3700632:-1 gene:Y37E11AL.9 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3699804-3700638(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.9
Entrez Gene 189622 Entrez gene
SwissProt Q9N442 EMBL-EBI
WormBase CE26061 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59445 Hypothetical protein Y37E11AL.9 [Caenorhabditis elegans] ref|NP_500400.1| Y37E11AL.9 [Caenorhabditis elegans] 1.0E-67
blast CAE74114 Hypothetical protein CBG21775 [Caenorhabditis briggsae] 1.0E-10
blast CAE74115 Hypothetical protein CBG21776 [Caenorhabditis briggsae] 3.0E-9
Sequence
Target Sequence 
>C. ELEGANS:177326_AT
tgactatcgccatcgatgcttcactctctgttggaatcagaaaatttaagaacttcaaaa
gatctgctggtggcgtccaaaaattcagtgggtctgcaagaaaatcaactaataagcaat
caacgaatgcagcagtcagaattattgaaaaccgtgtcgcatccacgaacttcaacaaga
aatcagtctcaaaagctacaagaaatatttcaagccgagtcacattcccgaatgcttcaa
gagctccaaaagatccaagaagatcggataaagctcaaagagcaccgaaaaattacagaa
caggagctcaaaagcaggtgaagccaaaaagagaagctcgttcagagatgacgatcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGACTATCGCCATCGATGCTTCACT 89 571 14 Antisense
ATGCTTCACTCTCTGTTGGAATCAG 170 43 29 Antisense
AAAGATCTGCTGGTGGCGTCCAAAA 100 123 71 Antisense
GCGTCCAAAAATTCAGTGGGTCTGC 89 293 86 Antisense
ACGAATGCAGCAGTCAGAATTATTG 573 91 136 Antisense
ATTATTGAAAACCGTGTCGCATCCA 239 13 154 Antisense
GTCGCATCCACGAACTTCAACAAGA 319 475 169 Antisense
TATTTCAAGCCGAGTCACATTCCCG 85 663 219 Antisense
ACATTCCCGAATGCTTCAAGAGCTC 438 105 235 Antisense
GGAGCTCAAAAGCAGGTGAAGCCAA 295 519 316 Antisense
GAAGCTCGTTCAGAGATGACGATCC 246 343 346 Antisense
Sequence Source Affymetrix Proprietary Database