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[177325_at]

Description R57.2 /REP_DB=WormBase Gene ID /WP=CE12846 /TR=P91405 /GB=AAB52661.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 60      6grp_total > 60      4grp_total > 49      6grp_high1_sub > 04      6grp_total_sub > Hat      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 998
1 2 3 4 range
A 80.6
(-3)
A 		1014.4
(3)
P 		799.8
(1.6)
P 		108.6
(-2.8)
A 		934
B 17.7
(-3)
A 		913.6
(3)
P 		902.8
(2.9)
P 		19.3
(-3)
A 		896
C 33.3
(-2.9)
A 		870.8
(3)
P 		784.5
(2.4)
P 		16.3
(-3)
A 		855
avr 43.9
(-3) 		932.9
(3) 		829
(2.3) 		48.1
(-3) 		889

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1456
1 2 3 4 5 6 range
A 1234.1
(1.3)
P 		653.6
(-1.3)
P 		1182.2
(1.1)
P 		1597.6
(3)
P 		784.6
(-0.7)
P 		293.3
(-3)
A 		1304
B 903.9
(-0.4)
P 		700.9
(-1.3)
P 		1077.5
(0.3)
P 		1706.2
(3)
P 		762.7
(-1)
P 		297
(-3)
A 		1409
C 945.3
(-0.4)
P 		751
(-1.2)
P 		1106.9
(0.3)
P 		1749.5
(3)
P 		640
(-1.7)
P 		331.4
(-3)
P 		1418
avr 1027.8
(0.1) 		701.8
(-1.3) 		1122.2
(0.6) 		1684.4
(3) 		729.1
(-1.2) 		307.2
(-3) 		1377
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 271
1 2 3 4 range
A 29.3
(-2.6)
A 		220.2
(3)
P 		209.1
(2.7)
P 		15.9
(-3)
A 		204
B 5.6
(-3)
A 		225.6
(3)
P 		209.2
(2.6)
P 		4.1
(-3)
A 		222
C 11
(-2.8)
A 		250.4
(2.5)
P 		273.4
(3)
P 		2.7
(-3)
A 		271
avr 15.3
(-2.8) 		232.1
(3) 		230.6
(3) 		7.6
(-3) 		225

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 381
1 2 3 4 5 6 range
A 227.5
(-0.2)
P 		232.4
(-0.1)
P 		257.5
(0.3)
P 		405.2
(3)
P 		236.7
(-0)
P 		71.4
(-3)
A 		334
B 314.5
(0.6)
P 		233.3
(-0.8)
P 		261.6
(-0.3)
P 		451.9
(3)
P 		309.9
(0.5)
P 		110.8
(-3)
A 		341
C 350.4
(3)
P 		229.2
(-0.1)
P 		281.7
(1.3)
P 		351.8
(3)
P 		207.1
(-0.6)
P 		110.9
(-3)
P 		241
avr 297.5
(0.9) 		231.6
(-0.4) 		266.9
(0.3) 		403
(3) 		251.2
(0) 		97.7
(-3) 		305
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177325_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18506
Sequence Type Exemplar sequence
Representative Public ID R57.2 NCBI
Target Description R57.2 /REP_DB=WormBase Gene ID /WP=CE12846 /TR=P91405 /GB=AAB52661.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075683
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
R57.2 ENSEMBL cdna:known chromosome:CEL140:X:297248:299177:1 gene:R57.2 None
NM_075683 NCBI Caenorhabditis elegans R57.2 (R57.2) mRNA, complete cds. None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:297247-299177(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl R57.2
Entrez Gene 180385 Entrez gene
SwissProt P91405 EMBL-EBI
WormBase CE35753 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_508084 R57.2 [Caenorhabditis elegans] gb|AAB52661.3| Hypothetical protein R57.2 [Caenorhabditis elegans] 1.0E-119
blast CAE63677 Hypothetical protein CBG08179 [Caenorhabditis briggsae] 3.0E-96
blast CAE61288 Hypothetical protein CBG05111 [Caenorhabditis briggsae] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR002602 EMBL-EBI Protein of unknown function DB 1.1E-56
Sequence
Target Sequence 
>C. ELEGANS:177325_AT
gtaacctgaacgaactttgctctatgttaatacatgcgtacaaaaaacattggttttcag
gggcttgctgcacagcacctatcaccccaggatgtcgacttccccgacaatttttttcca
gaaaagttggaaatgatcgccgctctgctccgagaaaaccgttgggcaaatgtggaacat
cggaggtaaactatcaaccatgcacttccaagggaattgcgaacaaactctttttgtcgt
gctgtcaattgtatgttccagaagaatgccatcacatgtgtgtgtacgaaactgatcagt
cggttactagaaatatggtaagtgtccaaagtaaattcaaaatactgaccaacatgcgga
aagatagccagtgccgaattaaacacctgtcgtcaattttgtactgtgccagccagaaca
gagataataggaaatgctgcttggatttagatctcaatgcccctcaacttcaggttggat
ctcgttgcttgcgaatgtgtgatccatcgggtacttcaatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTAACCTGAACGAACTTTGCTCTAT 353 461 98 Antisense
TTCAGGGGCTTGCTGCACAGCACCT 561 685 153 Antisense
GATGTCGACTTCCCCGACAATTTTT 221 409 188 Antisense
AAAGTTGGAAATGATCGCCGCTCTG 291 123 220 Antisense
CGCTCTGCTCCGAGAAAACCGTTGG 634 253 238 Antisense
CAAACTCTTTTTGTCGTGCTGTCAA 432 191 321 Antisense
TCGTCAATTTTGTACTGTGCCAGCC 702 603 487 Antisense
TTGGATTTAGATCTCAATGCCCCTC 323 705 538 Antisense
AATGCCCCTCAACTTCAGGTTGGAT 423 167 553 Antisense
AGGTTGGATCTCGTTGCTTGCGAAT 412 57 569 Antisense
GTGTGATCCATCGGGTACTTCAATC 329 487 594 Antisense
Sequence Source Affymetrix Proprietary Database