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[177322_at]

Description ZK39.4 /REP_DB=WormBase Gene ID /WP=CE19315 /TR=Q9XUI0 /GB=CAB05020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 60      4grp_total > 34      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 9
1 2 3 4 range
A 4.1
(-2.4)
A 		12.5
(3)
A 		3.1
(-3)
A 		8.8
(0.6)
A 		9
B 3.8
(-3)
A 		5.1
(1.6)
A 		4.5
(-0.5)
A 		5.5
(3)
A 		2
C 4.1
(-3)
A 		5.9
(0.3)
A 		6.5
(1.4)
A 		7.4
(3)
A 		3
avr 4
(-3) 		7.8
(3) 		4.7
(-1.9) 		7.2
(2.1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 4.7
(1.6)
A 		4
(-1.6)
A 		3.7
(-3)
A 		4.8
(2.1)
A 		5
(3)
A 		4.5
(0.7)
A 		1
B 3.4
(-1.1)
A 		3.2
(-1.5)
A 		5.5
(3)
A 		4.2
(0.5)
A 		2.6
(-2.6)
A 		2.4
(-3)
A 		3
C 4.9
(1.1)
A 		4.1
(-0.4)
A 		3.3
(-1.9)
A 		5.9
(3)
A 		3.4
(-1.7)
A 		2.7
(-3)
A 		3
avr 4.3
(0.7) 		3.8
(-1) 		4.2
(0.3) 		5
(3) 		3.7
(-1.3) 		3.2
(-3) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.5
(-0.8)
A 		2.7
(3)
A 		0.8
(-3)
A 		1.3
(-1.4)
A 		2
B 1.2
(1)
A 		1.3
(3)
A 		1
(-3)
A 		1.2
(1)
A 		0
C 1.4
(-2.4)
A 		1.7
(-0.6)
A 		2.3
(3)
A 		1.3
(-3)
A 		1
avr 1.4
(-2) 		1.9
(3) 		1.4
(-2) 		1.3
(-3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 0.9
(-2.1)
A 		1.4
(2.1)
A 		0.8
(-3)
A 		1.2
(0.4)
A 		1.5
(3)
A 		1.1
(-0.4)
A 		1
B 1.2
(1.5)
A 		1.1
(0)
A 		1.3
(3)
A 		1.1
(0)
A 		1.1
(0)
A 		0.9
(-3)
A 		0
C 1.8
(3)
A 		1.2
(-0.6)
A 		0.8
(-3)
A 		1.2
(-0.6)
A 		1.1
(-1.2)
A 		0.9
(-2.4)
A 		1
avr 1.3
(3) 		1.2
(1) 		1
(-3) 		1.2
(1) 		1.2
(1) 		1
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177322_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2436
Sequence Type Exemplar sequence
Representative Public ID ZK39.4 NCBI
Target Description ZK39.4 /REP_DB=WormBase Gene ID /WP=CE19315 /TR=Q9XUI0 /GB=CAB05020.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_060465(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_060465 NCBI Caenorhabditis elegans ZK39.4 (ZK39.4) mRNA, complete cds. 11/11 None
GENEFINDER00000035813 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11150238:11152215:1 10/11 None
ZK39.4 ENSEMBL cdna:known chromosome:CEL140:I:11150238:11152215:1 gene:ZK39.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000035801 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11150168-11152146(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK39.4
Entrez Gene 191212 Entrez gene
SwissProt Q9XUI0 EMBL-EBI
WormBase CE19315 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB05020 Hypothetical protein ZK39.4 [Caenorhabditis elegans] ref|NP_492866.1| ZK39.4 [Caenorhabditis elegans] 1.0E-103
blast CAB05020 Hypothetical protein ZK39.4 [Caenorhabditis elegans] ref|NP_492866.1| ZK39.4 [Caenorhabditis elegans] 1.0E-98
blast CAB05019 Hypothetical protein ZK39.3 [Caenorhabditis elegans] ref|NP_492867.1| ZK39.3 [Caenorhabditis elegans] 1.0E-57
blast CAB05019 Hypothetical protein ZK39.3 [Caenorhabditis elegans] ref|NP_492867.1| ZK39.3 [Caenorhabditis elegans] 3.0E-54
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 2.0E-51
blast CAE63493 Hypothetical protein CBG07963 [Caenorhabditis briggsae] 1.0E-48
Sequence
Target Sequence 
>C. ELEGANS:177322_AT
gcaattggttttagctcttcgtcgagtgaatcttgtgaaggtggccgtggaggtggcaat
ggaggtggaagacctccaggcggcggagcaaatggcggctgtggagctggatggcgtcga
ttgaaccgtccatctggtggctggtgtgtccgagcattcggtgggtatctaactcaagca
aatgcagagattcaatgcaaatcccatggcgcaacactttccggactgcaaaatatggag
gaagcacgtattatatccaacatggctctttccgtgctcaaccgagctagtggttccgtc
tggatcggtgcaaagcggactgctgcttgcacaagaaatggcataagctcccagtgcacc
gctaccaactccttctactggactgacaactcagcatccggaattgctggattcgttagg
gcccaccagcagccagacaatgctcatggaaagactcagttgtgggcaattcttctctca
tcgagaacttcgttgagagtgaaacatgtgatgtggcagcctggaatgctagatgacgtg
gcatgtgtcatgaatccctcggatcccagtccgagagctgtgtcgg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCAATTGGTTTTAGCTCTTCGTCGA 6 323 61 Antisense
CAGGCGGCGGAGCAAATGGCGGCTG 115 209 137 Antisense
GCTGGATGGCGTCGATTGAACCGTC 130 295 166 Antisense
ATGCAAATCCCATGGCGCAACACTT 663 43 255 Antisense
TATATCCAACATGGCTCTTTCCGTG 535 661 312 Antisense
GCTCAACCGAGCTAGTGGTTCCGTC 557 299 336 Antisense
GTGGTTCCGTCTGGATCGGTGCAAA 579 489 350 Antisense
GCAAAGCGGACTGCTGCTTGCACAA 461 317 370 Antisense
GAAATGGCATAAGCTCCCAGTGCAC 446 361 395 Antisense
TCAGTTGTGGGCAATTCTTCTCTCA 600 623 516 Antisense
GATCCCAGTCCGAGAGCTGTGTCGG 298 417 622 Antisense
Sequence Source Affymetrix Proprietary Database