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[177321_at]

Description ZK39.1 /REP_DB=WormBase Gene ID /WP=CE19312 /TR=Q9XUI3 /GB=CAB05017.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Cluster 6grp_total > 09      4grp_total > 02      6grp_cgc > 0      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 4.8
(-2.7)
A 		4.1
(-3)
A 		6
(-2.3)
A 		20.2
(3)
A 		16
B 4.9
(-3)
A 		7.2
(2.8)
A 		7.3
(3)
A 		5.5
(-1.5)
A 		2
C 9.8
(-0.7)
A 		7.4
(-2.2)
A 		6.2
(-3)
A 		15.5
(3)
A 		9
avr 6.5
(-2.8) 		6.2
(-3) 		6.5
(-2.8) 		13.7
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 9.4
(2.1)
A 		6
(-1.2)
A 		10.3
(3)
A 		6.8
(-0.4)
A 		7.4
(0.2)
A 		4.1
(-3)
A 		6
B 10.9
(3)
A 		5.4
(-1.1)
A 		4.3
(-2)
A 		2.9
(-3)
A 		6.5
(-0.3)
A 		5
(-1.4)
A 		8
C 4.2
(-2.5)
A 		4
(-2.6)
A 		3.2
(-3)
A 		14.5
(3)
A 		6.6
(-1.2)
A 		3.5
(-2.8)
A 		11
avr 8.2
(3) 		5.1
(-1.7) 		5.9
(-0.4) 		8.1
(2.9) 		6.8
(0.9) 		4.2
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.7
(-0.7)
A 		0.9
(-3)
A 		1.6
(-1)
A 		3
(3)
A 		2
B 1.6
(1)
A 		1.8
(3)
A 		1.7
(2)
A 		1.2
(-3)
A 		1
C 3.2
(3)
A 		2.1
(-3)
A 		2.2
(-2.5)
A 		2.6
(-0.3)
A 		1
avr 2.2
(2.1) 		1.6
(-3) 		1.8
(-1.3) 		2.3
(3) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3
1 2 3 4 5 6 range
A 1.7
(0.5)
A 		2.1
(2.5)
A 		2.2
(3)
A 		1.7
(0.5)
A 		2.2
(3)
A 		1
(-3)
A 		1
B 3.8
(3)
A 		1.8
(-1)
A 		1
(-2.6)
A 		0.8
(-3)
A 		2.6
(0.6)
A 		1.9
(-0.8)
A 		3
C 1.6
(-0.7)
A 		1.2
(-1.9)
A 		0.8
(-3)
A 		2.9
(3)
A 		2.1
(0.7)
A 		1.2
(-1.9)
A 		2
avr 2.4
(3) 		1.7
(-0.8) 		1.3
(-3) 		1.8
(-0.3) 		2.3
(2.5) 		1.4
(-2.5) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177321_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2331
Sequence Type Exemplar sequence
Representative Public ID ZK39.1 NCBI
Target Description ZK39.1 /REP_DB=WormBase Gene ID /WP=CE19312 /TR=Q9XUI3 /GB=CAB05017.1 /SUBMIT=HINXTON /CHR=1 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001026479(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001026479 NCBI Caenorhabditis elegans W02B9.1b (cadherin) mRNA, complete cds. 10/11 None
GENEFINDER00000035809 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:11135562:11138657:-1 10/11 None
W02B9.1b ENSEMBL cdna:known chromosome:CEL140:I:11083883:11142792:-1 gene:W02B9.1 10/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Splice Variants
Entrez Total Refseq Isoforms Total Detected By This Probeset Refseq Probesets
173007 2 1 NM_001026479 177321_at (10), 190462_at (10)
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:11135769-11139716(-) 100.0 100.0
Public Domain and Genome References
Ensembl W02B9.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD27619 Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAD27620.1| Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAD27611.1| Hypothetical protein W02B9.1b [Caenorhabditis elegans] emb|CAC38842.1| HMR-1B protein [Caenorhabditis elegans] ref|NP_001021650.1| W02B9.1b [Caenorhabditis elegans] 0.0
blast CAE63494 Hypothetical protein CBG07964 [Caenorhabditis briggsae] 0.0
blast T27110 hypothetical protein Y52B11B.2 - Caenorhabditis elegans 0.0
blast T27839 hypothetical protein ZK39.1 - Caenorhabditis elegans 0.0
blast CAE63494 Hypothetical protein CBG07964 [Caenorhabditis briggsae] 1.0E-130
Protein Domains
Database ID Description E-Value
Pfam IPR006209 EMBL-EBI EGF-like domain 2.6E-4
Pfam IPR001791 EMBL-EBI Laminin G 1.2E-18
Pfam IPR002126 EMBL-EBI Cadherin 1.2E-17
Pfam IPR002126 EMBL-EBI Cadherin 2.9E-6
Pfam IPR002126 EMBL-EBI Cadherin 3.7E-7
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-7
Pfam IPR002126 EMBL-EBI Cadherin 2.0E-14
Pfam IPR002126 EMBL-EBI Cadherin 4.8E-15
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-13
Pfam IPR002126 EMBL-EBI Cadherin 3.2E-17
Pfam IPR002126 EMBL-EBI Cadherin 2.3E-9
Pfam IPR002126 EMBL-EBI Cadherin 2.7E-17
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001021650.1 1 2779-2801
W02B9.1b 1 2779-2801
Sequence
Target Sequence 
>C. ELEGANS:177321_AT
caattccggccaattcaacggtgtttgacgtggaaaaaagaaacctctcggagcccctcc
tctttcaccttgaagagccatcccgatttttcaaaattgatcaattctctggccgagttt
ctaccgtactcccagtaggttacggtacctaccatatccacgtggtcgcccgaaaccaga
aaaaacaaagatccgatgcttggctcgagatttcggtgaaaaaagagcagaagctggagc
cgatgacatcatcacgttcgcggcggcatctggatgatattgtatttcgaattccggaga
atacgactatggaggacattgagaagaaggatatgcctgtgagcctcaaccaacttaagt
ttttttgtcagaaaattcctttgtttgctggtgaaacaattggagagatcaatgttgcca
aggaatggctaaaaatcgacgatgacgggaaaattcaccttttgaagccattaaactacg
aaaaaactagttccatcatcgcaactgtgcctatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATTCCGGCCAATTCAACGGTGTT 325 179 806 Antisense
CCTCCTCTTTCACCTTGAAGAGCCA 385 267 861 Antisense
AAGAGCCATCCCGATTTTTCAAAAT 186 155 878 Antisense
TCAATTCTCTGGCCGAGTTTCTACC 94 633 906 Antisense
TCTACCGTACTCCCAGTAGGTTACG 633 613 925 Antisense
GTTACGGTACCTACCATATCCACGT 42 445 944 Antisense
GATGCTTGGCTCGAGATTTCGGTGA 429 413 1000 Antisense
CCGATGACATCATCACGTTCGCGGC 593 263 1045 Antisense
GTTCGCGGCGGCATCTGGATGATAT 100 443 1061 Antisense
GATATGCCTGTGAGCCTCAACCAAC 491 425 1135 Antisense
TTCCATCATCGCAACTGTGCCTATT 382 697 1296 Antisense
Sequence Source Affymetrix Proprietary Database