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[177319_s_at]

Description M70.1 /REP_DB=WormBase Gene ID /WP=CE17193 /TR=O45187 /GB=AAC04435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 78      4grp_total > 15      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 41.4
(-0.7)
M 		29.8
(-2.3)
A 		24.3
(-3)
A 		68.8
(3)
A 		45
B 69.3
(3)
A 		22.2
(-1.6)
A 		36.4
(-0.2)
A 		7.7
(-3)
A 		62
C 39.5
(1.3)
A 		6.8
(-3)
A 		27.7
(-0.2)
A 		52.1
(3)
A 		45
avr 50.1
(3) 		19.6
(-3) 		29.5
(-1.1) 		42.9
(1.6) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 84
1 2 3 4 5 6 range
A 41.6
(-1.9)
A 		34.6
(-2.8)
A 		36.8
(-2.5)
A 		32.5
(-3)
A 		42.3
(-1.8)
M 		83.4
(3)
P 		51
B 4.8
(-3)
A 		24.4
(-1.6)
A 		9.4
(-2.7)
A 		30.5
(-1.1)
A 		46.8
(0)
P 		88
(3)
P 		83
C 21.6
(-1.7)
A 		41.2
(-0.3)
A 		4.3
(-3)
A 		30.7
(-1.1)
A 		60.5
(1.1)
P 		86.9
(3)
P 		83
avr 22.7
(-2.5) 		33.4
(-1.6) 		16.8
(-3) 		31.2
(-1.8) 		49.9
(-0.1) 		86.1
(3) 		69
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 15.1
(3)
M 		6.5
(-2.9)
A 		6.4
(-3)
A 		10.1
(-0.4)
A 		9
B 22.1
(3)
A 		5.5
(-1.9)
A 		8.4
(-1)
A 		1.6
(-3)
A 		21
C 13.1
(3)
A 		2
(-3)
A 		9.6
(1.1)
A 		8.8
(0.7)
A 		11
avr 16.8
(3) 		4.7
(-3) 		8.1
(-1.3) 		6.8
(-2) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 32
1 2 3 4 5 6 range
A 7.7
(-3)
A 		12.3
(-0.8)
A 		8
(-2.9)
A 		8.3
(-2.7)
A 		12.8
(-0.6)
M 		20.3
(3)
P 		13
B 1.7
(-3)
A 		8.1
(-1.8)
A 		2.3
(-2.9)
A 		8.1
(-1.8)
A 		19
(0.3)
P 		32.8
(3)
P 		31
C 8
(-1.5)
A 		12.6
(-0.5)
A 		1.1
(-3)
A 		6.2
(-1.9)
A 		19.6
(1)
P 		29.1
(3)
P 		28
avr 5.8
(-2.5) 		11
(-1.2) 		3.8
(-3) 		7.5
(-2.1) 		17.1
(0.4) 		27.4
(3) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177319_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10622
Sequence Type Exemplar sequence
Representative Public ID M70.1 NCBI
Target Description M70.1 /REP_DB=WormBase Gene ID /WP=CE17193 /TR=O45187 /GB=AAC04435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067781(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067781 NCBI Caenorhabditis elegans M70.1 (M70.1) mRNA, complete cds. 11/11 None
SNAP00000012657 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2248980:2252201:1 11/11 None
GENEFINDER00000012662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2245896:2252314:1 11/11 None
M70.1 ENSEMBL cdna:known chromosome:CEL140:IV:2245896:2252360:1 gene:M70.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2245901-2251359(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M70.1
Entrez Gene 177014 Entrez gene
SwissProt O45187 EMBL-EBI
WormBase CE28633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04435 Hypothetical protein M70.1 [Caenorhabditis elegans] ref|NP_500182.1| M70.1 [Caenorhabditis elegans] 0.0
blast AAK71388 Hypothetical protein M70.3a [Caenorhabditis elegans] ref|NP_500179.1| M70.3a [Caenorhabditis elegans] 0.0
blast AAK71389 Hypothetical protein M70.3b [Caenorhabditis elegans] ref|NP_500180.1| M70.3b [Caenorhabditis elegans] 0.0
blast AAC04435 Hypothetical protein M70.1 [Caenorhabditis elegans] ref|NP_500182.1| M70.1 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 7.9E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500182.1 1 782-804
M70.1 1 782-804
SNAP00000012657 1 2-24
GENEFINDER00000012662 1 782-804
Sequence
Target Sequence 
>C. ELEGANS:177319_S_AT
ctcctgcacctccagctaaagatgagaagccgaaggacgttaatgttaagaaagccgaga
ccgagaagccaaaaactgaagttacgccgaaacctgcacacaaaagcgctgccagtaaag
tcgatgcaaccaacacgaaaactgaggatc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTCCTGCACCTCCAGCTAAAGATGA 432 235 2534 Antisense
GCACCTCCAGCTAAAGATGAGAAGC 84 315 2539 Antisense
GAAGCCGAAGGACGTTAATGTTAAG 341 341 2559 Antisense
AAGAAAGCCGAGACCGAGAAGCCAA 363 153 2581 Antisense
GCCGAGACCGAGAAGCCAAAAACTG 88 285 2587 Antisense
ACTGAAGTTACGCCGAAACCTGCAC 260 97 2608 Antisense
TACGCCGAAACCTGCACACAAAAGC 297 649 2616 Antisense
ACCTGCACACAAAAGCGCTGCCAGT 536 87 2625 Antisense
AAGCGCTGCCAGTAAAGTCGATGCA 646 147 2637 Antisense
GCCAGTAAAGTCGATGCAACCAACA 362 279 2644 Antisense
GCAACCAACACGAAAACTGAGGATC 525 317 2659 Antisense
Sequence Source Affymetrix Proprietary Database