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[177318_at]

Description M70.1 /REP_DB=WormBase Gene ID /WP=CE17193 /TR=O45187 /GB=AAC04435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_high1_10_10 > 88      4grp_high_8_8 > 29      6grp_total > 79      4grp_total > 26      6grp_high1_sub > Da      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 34.8
(-3)
A 		72
(3)
P 		42.6
(-1.7)
P 		71.2
(2.9)
P 		37
B 43
(-3)
A 		48.3
(-0)
P 		53.6
(3)
P 		45.7
(-1.5)
A 		11
C 32.7
(-3)
P 		79.4
(1.9)
P 		40.7
(-2.2)
P 		90.1
(3)
P 		57
avr 36.8
(-3) 		66.6
(2.6) 		45.6
(-1.4) 		69
(3) 		32

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 98
1 2 3 4 5 6 range
A 87.9
(3)
P 		29.7
(-1.5)
P 		10.4
(-3)
A 		36
(-1)
P 		57.9
(0.7)
A 		73.9
(1.9)
P 		78
B 32.1
(-2.6)
P 		37.4
(-2.2)
P 		62.1
(-0.1)
P 		27.1
(-3)
A 		42.5
(-1.7)
A 		100.6
(3)
P 		74
C 24.4
(-1.5)
P 		56.9
(0.7)
P 		51
(0.3)
P 		2.7
(-3)
A 		62.3
(1.1)
P 		89.8
(3)
P 		87
avr 48.1
(-0.6) 		41.3
(-1.2) 		41.2
(-1.3) 		21.9
(-3) 		54.2
(-0.1) 		88.1
(3) 		66
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 12.7
(-0.3)
A 		15.6
(3)
P 		11.1
(-2.2)
P 		10.4
(-3)
P 		5
B 13.7
(3)
A 		11.9
(0.3)
P 		12.4
(1.1)
P 		9.7
(-3)
A 		4
C 10.8
(-3)
P 		22.8
(3)
P 		14.2
(-1.3)
P 		15.2
(-0.8)
P 		12
avr 12.4
(-2.3) 		16.8
(3) 		12.6
(-2) 		11.8
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 16.2
(2.3)
P 		10.5
(0.1)
P 		2.3
(-3)
A 		9.1
(-0.4)
P 		17.5
(2.8)
A 		18
(3)
P 		16
B 11.2
(-2.2)
P 		12.5
(-2)
P 		15.1
(-1.4)
P 		7.2
(-3)
A 		17.3
(-1)
A 		37.5
(3)
P 		30
C 9
(-1.3)
P 		17.4
(0.4)
P 		13
(-0.5)
P 		0.5
(-3)
A 		20.2
(1)
P 		30.1
(3)
P 		30
avr 12.1
(-1.3) 		13.5
(-0.9) 		10.1
(-1.8) 		5.6
(-3) 		18.3
(0.3) 		28.5
(3) 		23
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177318_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10622
Sequence Type Exemplar sequence
Representative Public ID M70.1 NCBI
Target Description M70.1 /REP_DB=WormBase Gene ID /WP=CE17193 /TR=O45187 /GB=AAC04435.1 /SUBMIT=ST.LOUIS /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067781
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
GENEFINDER00000012662 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:2245896:2252314:1 None
M70.1 ENSEMBL cdna:known chromosome:CEL140:IV:2245896:2252360:1 gene:M70.1 A 
SNAP00000012657 ENSEMBL cdna:SNAP chromosome:CEL140:IV:2248980:2252201:1 None
NM_067781 NCBI Caenorhabditis elegans M70.1 (M70.1) mRNA, complete cds. A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2245901-2251359(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M70.1
Entrez Gene 177014 Entrez gene
SwissProt O45187 EMBL-EBI
WormBase CE28633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAC04435 Hypothetical protein M70.1 [Caenorhabditis elegans] ref|NP_500182.1| M70.1 [Caenorhabditis elegans] 0.0
blast AAK71388 Hypothetical protein M70.3a [Caenorhabditis elegans] ref|NP_500179.1| M70.3a [Caenorhabditis elegans] 0.0
blast AAK71389 Hypothetical protein M70.3b [Caenorhabditis elegans] ref|NP_500180.1| M70.3b [Caenorhabditis elegans] 0.0
blast AAC04435 Hypothetical protein M70.1 [Caenorhabditis elegans] ref|NP_500182.1| M70.1 [Caenorhabditis elegans] 1.0E-43
Protein Domains
Database ID Description E-Value
Pfam IPR003125 EMBL-EBI Protein of unknown function WSN 7.9E-16
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500182.1 1 782-804
M70.1 1 782-804
SNAP00000012657 1 2-24
GENEFINDER00000012662 1 782-804
Sequence
Target Sequence 
>C. ELEGANS:177318_AT
accgcaggtgacaatggcgactcctcaaatagcaacatgatcatcattatcgaagtctca
attttaattcctcttctcatccttatcatcgttgtgcttattttgtggtccagaaaatta
ctgtgttttaagaaaaaagacaccaagccctctgcccccaagccaaaaccagatgttccg
gtcaatcctacgcctcaaactgccaaagttccagttgctcctgcacctccagctaaagat
gagaagccgaaggacgttaatgttaagaaagccgagaccgagaagccaaaaactgaagtt
acgccgaaacctgcacacaaaagcgctgccagtaaagtcgatgcaaccaacacgaaaact
gaggatcaaagtactgaccaaaatcgtaccaccgagtcagttggtcaaacaacagaaact
actggaaatactactactgaggagggtgctgttcccattgattggccaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACCGCAGGTGACAATGGCGACTCCT 156 89 2317 Antisense
TGGCGACTCCTCAAATAGCAACATG 596 543 2331 Antisense
CTCAATTTTAATTCCTCTTCTCATC 681 227 2373 Antisense
TTCTCATCCTTATCATCGTTGTGCT 37 693 2390 Antisense
TCGTTGTGCTTATTTTGTGGTCCAG 266 603 2405 Antisense
AGAAAAAAGACACCAAGCCCTCTGC 330 71 2447 Antisense
AAACCAGATGTTCCGGTCAATCCTA 456 125 2482 Antisense
TACTGACCAAAATCGTACCACCGAG 388 643 2688 Antisense
GTACCACCGAGTCAGTTGGTCAAAC 33 457 2702 Antisense
ACTACTACTGAGGAGGGTGCTGTTC 609 101 2746 Antisense
GTGCTGTTCCCATTGATTGGCCAAA 437 479 2762 Antisense
Sequence Source Affymetrix Proprietary Database