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[177315_at]

Description Y59H11AR.B /REP_DB=WormBase Gene ID /WP=CE26554 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59621.1
Cluster 6grp_total > 73      4grp_total > 24      6grp_total_sub > Hat      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 33
1 2 3 4 range
A 1.7
(-3)
A 		5.1
(-1.8)
A 		18.9
(3)
A 		15.7
(1.9)
A 		17
B 9.1
(-1.2)
A 		2.6
(-3)
A 		24.8
(3)
A 		14.3
(0.2)
A 		22
C 3.4
(-2.9)
A 		2.8
(-3)
A 		13.5
(-1)
A 		34.6
(3)
A 		32
avr 4.7
(-2.6) 		3.5
(-3) 		19.1
(2.2) 		21.5
(3) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 5.8
(-2.3)
A 		4
(-2.7)
A 		25.8
(3)
A 		3.7
(-2.8)
A 		14.8
(0.1)
A 		3
(-3)
A 		23
B 3.8
(-1.9)
A 		1.7
(-3)
A 		3.6
(-2)
A 		13.1
(3)
A 		4.8
(-1.4)
A 		11.4
(2.1)
A 		11
C 3.9
(-2.7)
A 		11.1
(2.4)
A 		3.5
(-3)
A 		6
(-1.2)
A 		12
(3)
A 		11.8
(2.9)
A 		9
avr 4.5
(-3) 		5.6
(-2) 		11
(3) 		7.6
(-0.1) 		10.5
(2.5) 		8.7
(0.9) 		7
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 5
1 2 3 4 range
A 0.6
(-3)
A 		1.1
(-2.3)
A 		4.9
(3)
A 		2.3
(-0.6)
A 		4
B 2.9
(-0.3)
A 		0.6
(-3)
A 		5.7
(3)
A 		3
(-0.2)
A 		5
C 1.1
(-2.6)
A 		0.8
(-3)
A 		4.7
(1.7)
A 		5.8
(3)
A 		5
avr 1.5
(-2) 		0.8
(-3) 		5.1
(3) 		3.7
(1) 		4

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1.1
(-2.5)
A 		1.4
(-2.1)
A 		5.6
(3)
A 		0.9
(-2.8)
A 		4.5
(1.7)
A 		0.7
(-3)
A 		5
B 1.3
(-1.9)
A 		0.6
(-3)
A 		0.9
(-2.5)
A 		3.5
(1.7)
A 		1.9
(-0.9)
A 		4.3
(3)
A 		4
C 1.4
(-2)
A 		3.4
(1.8)
A 		0.9
(-3)
A 		1.2
(-2.4)
A 		3.9
(2.8)
A 		4
(3)
A 		3
avr 1.3
(-3) 		1.8
(-1.6) 		2.5
(0.4) 		1.9
(-1.3) 		3.4
(3) 		3
(1.9) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177315_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19108
Sequence Type Exemplar sequence
Representative Public ID Y59H11AR.B NCBI
Target Description Y59H11AR.B /REP_DB=WormBase Gene ID /WP=CE26554 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59621.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069065(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069065 NCBI Caenorhabditis elegans Y59H11AR.3 (Y59H11AR.3) mRNA, complete cds. 11/11 None
SNAP00000008276 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8594965:8595399:-1 9/11 None
GENEFINDER00000008281 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8594965:8595399:-1 9/11 None
Y59H11AR.3 ENSEMBL cdna:known chromosome:CEL140:IV:8594965:8595399:-1 gene:Y59H11AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8594970-8595405(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59H11AR.3
Entrez Gene 190428 Entrez gene
SwissProt Q9N322 EMBL-EBI
WormBase CE26554 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59621 Hypothetical protein Y59H11AR.3 [Caenorhabditis elegans] ref|NP_501466.1| Y59H11AR.3 [Caenorhabditis elegans] 8.0E-70
blast AAF59621 Hypothetical protein Y59H11AR.3 [Caenorhabditis elegans] ref|NP_501466.1| Y59H11AR.3 [Caenorhabditis elegans] 5.0E-46
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 1.0E-21
blast NP_501417 D2096.5 [Caenorhabditis elegans] gb|AAA81489.2| Hypothetical protein D2096.5 [Caenorhabditis elegans] 8.0E-18
blast NP_501433 T26A8.3 [Caenorhabditis elegans] gb|AAA85754.1| Hypothetical protein T26A8.3 [Caenorhabditis elegans] 9.0E-16
Sequence
Target Sequence 
>C. ELEGANS:177315_AT
tgtgcattgccttcaaattatttgatgtggatgcaactacaagatttcatttcaatggaa
caataatttgtcgaacgccactggaaggatcatttgtgcagatgcttgcagtttatgaag
atgatttaacctctgatgacttgcttggagcaaccacaaacttcgtccgaactgagactg
gaatggcctttagtatcgatgttacggatgatggtgacggagcatatgatgtgagtgatc
tgcaaatcgaaatgattagatattggattaaagttttacagaccgactacgaaatatcgt
ttctcatcaaacacaattgcacgca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTGCATTGCCTTCAAATTATTTGA 68 557 14 Antisense
AATTTGTCGAACGCCACTGGAAGGA 264 175 78 Antisense
AAGGATCATTTGTGCAGATGCTTGC 167 161 98 Antisense
TTTAACCTCTGATGACTTGCTTGGA 96 671 138 Antisense
TGGAGCAACCACAAACTTCGTCCGA 416 547 159 Antisense
AACTTCGTCCGAACTGAGACTGGAA 514 137 172 Antisense
GGAATGGCCTTTAGTATCGATGTTA 149 533 193 Antisense
GTTACGGATGATGGTGACGGAGCAT 542 445 214 Antisense
TGATGTGAGTGATCTGCAAATCGAA 663 563 240 Antisense
GACCGACTACGAAATATCGTTTCTC 439 381 294 Antisense
TTCTCATCAAACACAATTGCACGCA 700 691 314 Antisense
Sequence Source Affymetrix Proprietary Database