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[177314_at]

Description Y59H11AR.C /REP_DB=WormBase Gene ID /WP=CE26555 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59622.1
Cluster 6grp_total > 60      4grp_total > 27      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 131
1 2 3 4 range
A 5.5
(-3)
A 		74.1
(0.1)
A 		29.3
(-1.9)
A 		136.4
(3)
A 		131
B 45.6
(1.1)
A 		62.7
(3)
A 		10
(-3)
A 		59
(2.6)
A 		53
C 38.1
(0.1)
A 		63.8
(3)
A 		11.1
(-3)
A 		46.9
(1.1)
A 		53
avr 29.7
(-1.8) 		66.9
(1.7) 		16.8
(-3) 		80.8
(3) 		64

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 66
1 2 3 4 5 6 range
A 63.9
(3)
A 		7.5
(-3)
A 		22.1
(-1.4)
A 		48
(1.3)
A 		7.3
(-3)
A 		8.6
(-2.9)
A 		57
B 5.1
(-3)
A 		9.9
(-2.6)
A 		33.1
(-0.4)
A 		70.9
(3)
A 		7
(-2.8)
A 		8.5
(-2.7)
A 		66
C 7.3
(-3)
A 		26.6
(-0.8)
A 		60.3
(3)
A 		13.7
(-2.3)
A 		37
(0.4)
A 		22.2
(-1.3)
A 		53
avr 25.4
(-0.6) 		14.7
(-2.7) 		38.5
(1.9) 		44.2
(3) 		17.1
(-2.2) 		13.1
(-3) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 2
(-3)
A 		16.1
(1.7)
A 		7.7
(-1.1)
A 		20
(3)
A 		18
B 14.5
(2.5)
A 		15.5
(3)
A 		2.3
(-3)
A 		12.6
(1.7)
A 		13
C 12.6
(0.6)
A 		18.3
(3)
A 		3.9
(-3)
A 		7.9
(-1.3)
A 		14
avr 9.7
(-0.5) 		16.6
(3) 		4.6
(-3) 		13.5
(1.5) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 17
1 2 3 4 5 6 range
A 11.8
(2.8)
A 		2.7
(-2.6)
A 		4.8
(-1.4)
A 		12.2
(3)
A 		2.2
(-2.9)
A 		2.1
(-3)
A 		10
B 1.8
(-3)
A 		3.3
(-2.5)
A 		8
(-0.8)
A 		18.8
(3)
A 		2.9
(-2.6)
A 		3.2
(-2.5)
A 		17
C 2.7
(-3)
A 		8.1
(-0.4)
A 		15.4
(3)
A 		2.8
(-3)
A 		12
(1.4)
A 		7.4
(-0.8)
A 		13
avr 5.4
(-2) 		4.7
(-2.6) 		9.4
(1.4) 		11.3
(3) 		5.7
(-1.7) 		4.2
(-3) 		7
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177314_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19104
Sequence Type Exemplar sequence
Representative Public ID Y59H11AR.C NCBI
Target Description Y59H11AR.C /REP_DB=WormBase Gene ID /WP=CE26555 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59622.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Consensus/Exemplar Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade C annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028373, NM_001028372, NM_001028371
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000008277 ENSEMBL cdna:SNAP chromosome:CEL140:IV:8596261:8596925:1 None
GENEFINDER00000008280 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8596033:8597113:1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8589822-8596931(+) 100.0 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAY86285 Hypothetical protein Y59H11AR.5 [Caenorhabditis elegans] 2.0E-94
blast AAY86285 Hypothetical protein Y59H11AR.5 [Caenorhabditis elegans] 4.0E-89
blast CAB05014 Hypothetical protein ZK39.7 [Caenorhabditis elegans] ref|NP_492871.1| ZK39.7 [Caenorhabditis elegans] 1.0E-50
blast CAB05014 Hypothetical protein ZK39.7 [Caenorhabditis elegans] ref|NP_492871.1| ZK39.7 [Caenorhabditis elegans] 2.0E-50
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 6.0E-47
blast CAE63492 Hypothetical protein CBG07961 [Caenorhabditis briggsae] 1.0E-45
Sequence
Target Sequence 
>C. ELEGANS:177314_AT
gaaaaatcactcacatcatatgctccgtcaccatcatccgtaacatcgatactaaaggcc
attccagtctcagttcggacgaagtttgtggttgctccaagcaagtcatcagagctacaa
attacttatatcataaaaccgtgtgagccgggatggttaaagttcaaccgaccatctggt
gtatggtgtattaaagtattcaatggaacacattctcaagccgatgctgaaaagctttgt
caaaaaaattatggcgctaccctttccggtgtacaaaatcaacgggaaattagttatgtc
acgcaacaagcacttggtaccatgagtcaaggcagtggatccatttggattggtgccaaa
agaacaactctttgcaaggcgtctcgactctctaaatactgtaatacgttgacttcattt
caatggacagatggatctgcttcaggacttgatggtcttatttggaacaataatcaacca
gataacaactataatcgtactgatcaatgcgttgttcttcttgctgctcgtactccaact
gtatctgatg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAAAAATCACTCACATCATATGCTC 600 355 3400 Antisense
GTCACCATCATCCGTAACATCGATA 593 465 3426 Antisense
CTAAAGGCCATTCCAGTCTCAGTTC 28 227 3451 Antisense
GTTCGGACGAAGTTTGTGGTTGCTC 272 443 3472 Antisense
AAAGTTCAACCGACCATCTGGTGTA 67 123 3558 Antisense
TGGAACACATTCTCAAGCCGATGCT 506 547 3603 Antisense
GTTATGTCACGCAACAAGCACTTGG 496 447 3692 Antisense
GAACAACTCTTTGCAAGGCGTCTCG 651 351 3761 Antisense
CGTCTCGACTCTCTAAATACTGTAA 71 247 3779 Antisense
CGTACTGATCAATGCGTTGTTCTTC 578 245 3895 Antisense
GCTCGTACTCCAACTGTATCTGATG 483 299 3925 Antisense
Sequence Source Affymetrix Proprietary Database