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[177313_at]

Description Y43B11AR.C /REP_DB=WormBase Gene ID /WP=CE24279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60570.1
Cluster 6grp_highest_10_10 > 78      6grp_high1_10_10 > 96      4grp_highest_8_8 > 23      4grp_high_8_8 > 05      6grp_highest_nonorm > 93      6grp_total > 87      4grp_total > 03      6grp_highest_sub > In      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1785
1 2 3 4 range
A 399
(-2.2)
P 		281.8
(-2.6)
P 		187.3
(-3)
P 		1729.8
(3)
P 		1543
B 387.8
(-2.3)
P 		189.5
(-3)
P 		208.9
(-2.9)
P 		1879.7
(3)
P 		1690
C 425.7
(-2.3)
P 		245.6
(-2.9)
P 		207.5
(-3)
P 		1972.3
(3)
P 		1765
avr 404.2
(-2.3) 		239
(-2.9) 		201.2
(-3) 		1860.6
(3) 		1659

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 486
1 2 3 4 5 6 range
A 325.8
(-1.9)
P 		340.4
(-1.6)
P 		273.8
(-3)
P 		452.1
(0.9)
P 		429
(0.4)
P 		549.5
(3)
P 		276
B 323.3
(-2.5)
P 		301.9
(-2.8)
P 		395
(-1.4)
P 		289.7
(-3)
P 		461
(-0.3)
P 		675.7
(3)
P 		386
C 223.4
(-3)
P 		309.4
(-1.9)
P 		340.3
(-1.6)
P 		452
(-0.2)
P 		422
(-0.5)
P 		709.6
(3)
P 		486
avr 290.8
(-3) 		317.2
(-2.6) 		336.4
(-2.2) 		397.9
(-1.2) 		437.3
(-0.5) 		644.9
(3) 		354
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 354
1 2 3 4 range
A 145.3
(-0.2)
P 		61.2
(-2.6)
P 		49
(-3)
P 		253.2
(3)
P 		204
B 123.7
(-1.7)
P 		46.8
(-3)
P 		48.4
(-3)
P 		400.6
(3)
P 		354
C 140.9
(-1.4)
P 		70.6
(-3)
P 		72.3
(-3)
P 		332.6
(3)
P 		262
avr 136.6
(-1.2) 		59.5
(-2.9) 		56.6
(-3) 		328.8
(3) 		272

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 192
1 2 3 4 5 6 range
A 60.1
(-3)
P 		121
(2)
P 		59.6
(-3)
P 		114.7
(1.5)
P 		129.4
(2.6)
P 		133.8
(3)
P 		74
B 112.5
(-1.8)
P 		100.5
(-2.2)
P 		95.9
(-2.3)
P 		76.7
(-3)
P 		187.3
(0.8)
P 		252
(3)
P 		175
C 82.8
(-3)
P 		94.4
(-2.6)
P 		86.6
(-2.9)
P 		90.9
(-2.7)
P 		136.6
(-0.9)
P 		237.5
(3)
P 		155
avr 85.1
(-2.8) 		105.3
(-1.8) 		80.7
(-3) 		94.1
(-2.4) 		151.1
(0.3) 		207.8
(3) 		127
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177313_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19098
Sequence Type Exemplar sequence
Representative Public ID Y43B11AR.C NCBI
Target Description Y43B11AR.C /REP_DB=WormBase Gene ID /WP=CE24279 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60570.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068701(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068701 NCBI Caenorhabditis elegans Y43B11AR.3 (Y43B11AR.3) mRNA, complete cds. 11/11 None
SNAP00000030380 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7082260:7083624:-1 11/11 None
GENEFINDER00000030383 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7082260:7083624:-1 11/11 None
Y43B11AR.3 ENSEMBL cdna:known chromosome:CEL140:IV:7082260:7083624:-1 gene:Y43B11AR.3 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7082265-7083630(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43B11AR.3
Entrez Gene 177480 Entrez gene
SwissProt Q9N3X3 EMBL-EBI
WormBase CE24279 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60570 Hypothetical protein Y43B11AR.3 [Caenorhabditis elegans] ref|NP_501102.1| Y43B11AR.3 [Caenorhabditis elegans] 0.0
blast CAE61798 Hypothetical protein CBG05761 [Caenorhabditis briggsae] 1.0E-150
blast CAE61798 Hypothetical protein CBG05761 [Caenorhabditis briggsae] 1.0E-138
blast EAA01531 ENSANGP00000019863 [Anopheles gambiae str. PEST] ref|XP_320970.2| ENSANGP00000019863 [Anopheles gambiae str. PEST] 7.0E-18
Sequence
Target Sequence 
>C. ELEGANS:177313_AT
tgtcacgcttggaatctgaatttcgtagtgcctcatttcgtcatgccaatgtagatatgg
agagttcagaagcatttgaattagctcgtcgaggagttccacgggctcagctacccggtt
cacaaatagtttattcgattgatttgaattggttccgatcaccaaaattctctgtgacaa
ctcaatgctctggcgaagacgatgaaatgctcagacaattgattgagcacattggttcaa
accttggtaccgagtctacgacaattcgacttcagagacagaattttggaccatttggaa
gtgacaatgcactgttagaaaaacaaattaatctacagaacattgctagaaatataattc
tgaatcgaaaaatcatcacttccgaatcagttaacaagaagattgtatcagaaagcgttg
agccggaagattcaacaaaaaatcgggagattttcgatggtttcggatt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTCACGCTTGGAATCTGAATTTCG 170 557 521 Antisense
TGAATTTCGTAGTGCCTCATTTCGT 307 571 537 Antisense
GCCTCATTTCGTCATGCCAATGTAG 58 283 550 Antisense
TTAGCTCGTCGAGGAGTTCCACGGG 252 681 601 Antisense
CTCAGCTACCCGGTTCACAAATAGT 387 227 626 Antisense
GGTTCCGATCACCAAAATTCTCTGT 378 507 671 Antisense
TGTGACAACTCAATGCTCTGGCGAA 489 555 693 Antisense
GAGCACATTGGTTCAAACCTTGGTA 71 391 745 Antisense
ACCTTGGTACCGAGTCTACGACAAT 466 85 761 Antisense
ACGACAATTCGACTTCAGAGACAGA 286 91 778 Antisense
GGGAGATTTTCGATGGTTTCGGATT 40 495 965 Antisense
Sequence Source Affymetrix Proprietary Database