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[177312_at]

Description Y59H11AR.A /REP_DB=WormBase Gene ID /WP=CE26553 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59620.1
Cluster 6grp_highest_10_10 > 10      6grp_high1_10_10 > 05      6grp_highest_nonorm > 80      6grp_total > 04      4grp_total > 0      6grp_high1_sub > De      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 57
1 2 3 4 range
A 128.7
(1.1)
P 		116.1
(-3)
M 		125.4
(0)
P 		134.5
(3)
A 		18
B 93.8
(-3)
P 		96
(-2.8)
A 		124.3
(0.2)
P 		151.1
(3)
A 		57
C 117.5
(-3)
P 		123.1
(-0.9)
A 		130.3
(1.9)
P 		133.2
(3)
A 		16
avr 113.3
(-2.7) 		111.7
(-3) 		126.7
(0.2) 		139.6
(3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 293
1 2 3 4 5 6 range
A 371
(3)
P 		189
(-1.5)
P 		140.1
(-2.7)
P 		136.9
(-2.8)
P 		206.4
(-1.1)
P 		128.7
(-3)
P 		242
B 250.7
(3)
P 		236.4
(2.4)
P 		188.4
(0.3)
P 		214.3
(1.4)
P 		209.8
(1.2)
P 		112.8
(-3)
P 		138
C 221.5
(2.8)
P 		227.6
(3)
P 		140.4
(-0.5)
P 		188.7
(1.4)
P 		136.4
(-0.7)
P 		78.3
(-3)
P 		149
avr 281.1
(3) 		217.7
(0.8) 		156.3
(-1.3) 		180
(-0.5) 		184.2
(-0.3) 		106.6
(-3) 		175
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 46.9
(3)
P 		25.2
(-1.8)
M 		32.8
(-0.1)
P 		19.7
(-3)
A 		27
B 29.9
(1.4)
P 		23.7
(-3)
A 		28.8
(0.6)
P 		32.2
(3)
A 		9
C 38.9
(1.3)
P 		35.4
(0.4)
A 		45.4
(3)
P 		22.5
(-3)
A 		23
avr 38.6
(3) 		28.1
(-1.6) 		35.7
(1.7) 		24.8
(-3) 		14

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 68.4
(3)
P 		67.2
(2.8)
P 		30.5
(-3)
P 		34.7
(-2.3)
P 		62.3
(2)
P 		31.3
(-2.9)
P 		38
B 87.2
(3)
P 		78.7
(1.9)
P 		45.7
(-2.5)
P 		56.8
(-1)
P 		85.2
(2.7)
P 		42.1
(-3)
P 		45
C 82.1
(3)
P 		69.4
(1.6)
P 		35.7
(-2)
P 		38
(-1.7)
P 		44.1
(-1.1)
P 		26.2
(-3)
P 		56
avr 79.2
(3) 		71.8
(2) 		37.3
(-2.5) 		43.2
(-1.7) 		63.9
(1) 		33.2
(-3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177312_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19111
Sequence Type Exemplar sequence
Representative Public ID Y59H11AR.A NCBI
Target Description Y59H11AR.A /REP_DB=WormBase Gene ID /WP=CE26553 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59620.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_069066(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_069066 NCBI Caenorhabditis elegans Y59H11AR.4 (Y59H11AR.4) mRNA, complete cds. 11/11 None
GENEFINDER00000008283 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:8598082:8600724:-1 9/11 None
Y59H11AR.4 ENSEMBL cdna:known chromosome:CEL140:IV:8598370:8600724:-1 gene:Y59H11AR.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000008278 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:8598375-8600730(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y59H11AR.4
Entrez Gene 190429 Entrez gene
SwissProt Q9N321 EMBL-EBI
WormBase CE26553 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
6865 amino acid transport inferred from electronic annotation QuickGO AmiGO
GO Cellular Component (view graph)
ID Description Evidence Links
16020 membrane inferred from electronic annotation QuickGO AmiGO
GO Molecular Function (view graph)
ID Description Evidence Links
5279 amino acid-polyamine transporter activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59620 Hypothetical protein Y59H11AR.4 [Caenorhabditis elegans] ref|NP_501467.1| Y59H11AR.4 [Caenorhabditis elegans] 0.0
blast CAE60022 Hypothetical protein CBG03527 [Caenorhabditis briggsae] 0.0
blast AAD14765 Hypothetical protein Y4C6B.2a [Caenorhabditis elegans] ref|NP_001023478.1| Y4C6B.2a [Caenorhabditis elegans] 6.0E-72
blast AAD14765 Hypothetical protein Y4C6B.2a [Caenorhabditis elegans] ref|NP_001023478.1| Y4C6B.2a [Caenorhabditis elegans] 3.0E-71
Protein Domains
Database ID Description E-Value
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 3.9E-48
Pfam IPR002422 EMBL-EBI Amino acid/polyamine transporter II 2.2E-58
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501467.1 9 7-29,39-61,92-114,124-146,153-175,195-217,230-252,272-294,307-329
Y59H11AR.4 9 7-29,39-61,92-114,124-146,153-175,195-217,230-252,272-294,307-329
GENEFINDER00000008283 11 7-29,39-61,92-114,124-146,153-175,195-217,230-252,272-293,306-328,332-354,387-409
Sequence
Target Sequence 
>C. ELEGANS:177312_AT
attctgattgcagtccatgtcttcttttctgtgctcattattgtcaatccacttctacaa
gcttctgagcatctcttcagagtcaagcatgcatcagtccctaattttggagttgtagta
aacttagttggtggatcaaccctacctttattggttctgatatttccaccactgtttgca
atgtgtttagaagtcagacagaagttggaagatgatggtgcaaaagaagaattcagtcta
aaatcaatctggaaatatcacccaaaacctcgacttctcctggatatctttatctatgta
cttggcacatacgtaatggttcactcaacatatcattcattatcttccaaatttttctct
gaaaatccttcaactcgttcatgtttttccacgtggttcagttcttcttataatgttcag
aatctgacaatgacgtcatcatctcattcaacacatttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATTCTGATTGCAGTCCATGTCTTCT 207 11 835 Antisense
TCTTCTTTTCTGTGCTCATTATTGT 371 617 854 Antisense
TGTCAATCCACTTCTACAAGCTTCT 519 559 876 Antisense
CTACAAGCTTCTGAGCATCTCTTCA 274 227 889 Antisense
CAAGCATGCATCAGTCCCTAATTTT 458 185 918 Antisense
GTGGATCAACCCTACCTTTATTGGT 130 491 965 Antisense
CTGATATTTCCACCACTGTTTGCAA 308 239 991 Antisense
CCTCGACTTCTCCTGGATATCTTTA 463 267 1102 Antisense
AAATCCTTCAACTCGTTCATGTTTT 196 119 1197 Antisense
TCCACGTGGTTCAGTTCTTCTTATA 397 587 1222 Antisense
GTCATCATCTCATTCAACACATTTT 399 467 1269 Antisense
Sequence Source Affymetrix Proprietary Database