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[177310_at]

Description Y43B11AR.E /REP_DB=WormBase Gene ID /WP=CE24281 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60572.1
Cluster 6grp_high1_10_10 > 97      4grp_highest_8_8 > 30      4grp_high_8_8 > 05      6grp_total > 76      4grp_total > 03      6grp_cgc > 58      6grp_high1_sub > In      6grp_cgc_sub > In      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 221
1 2 3 4 range
A 233.2
(-3)
P 		321.5
(-0.2)
P 		326.6
(-0)
P 		422.9
(3)
P 		190
B 357.4
(3)
P 		202
(-3)
P 		237.5
(-1.6)
P 		313.9
(1.3)
P 		155
C 256.6
(-2.4)
P 		280.6
(-1.2)
P 		245.4
(-3)
P 		360.9
(3)
P 		116
avr 282.4
(-2.1) 		268
(-3) 		269.8
(-2.9) 		365.9
(3) 		98

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 153
1 2 3 4 5 6 range
A 232
(2.8)
P 		198.6
(0.6)
P 		193.8
(0.3)
P 		144.9
(-3)
P 		234.8
(3)
P 		186.5
(-0.2)
P 		90
B 166.2
(-0.4)
P 		210.5
(2.2)
P 		122.3
(-3)
P 		206.3
(2)
P 		144.2
(-1.7)
P 		224
(3)
P 		102
C 82.1
(-3)
P 		139.9
(-0.6)
P 		188.2
(1.5)
M 		193.3
(1.7)
P 		168.1
(0.6)
P 		224.6
(3)
P 		143
avr 160.1
(-3) 		183
(-0.3) 		168.1
(-2.1) 		181.5
(-0.5) 		182.4
(-0.4) 		211.7
(3) 		52
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 64
1 2 3 4 range
A 84.9
(2.9)
P 		69.8
(-1)
P 		85.4
(3)
P 		61.9
(-3)
P 		24
B 114
(3)
P 		49.9
(-3)
P 		55
(-2.5)
P 		66.9
(-1.4)
P 		64
C 84.9
(2.9)
P 		80.7
(1.8)
P 		85.5
(3)
P 		60.9
(-3)
P 		25
avr 94.6
(3) 		66.8
(-2.3) 		75.3
(-0.7) 		63.2
(-3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 54
1 2 3 4 5 6 range
A 42.8
(-1.9)
P 		70.6
(2.9)
P 		42.2
(-2)
P 		36.7
(-3)
P 		70.9
(3)
P 		45.4
(-1.5)
P 		34
B 57.8
(0.1)
P 		70.1
(1.5)
P 		29.7
(-3)
P 		54.7
(-0.2)
P 		58.6
(0.2)
P 		83.5
(3)
P 		54
C 30.4
(-3)
P 		42.7
(-1.4)
P 		47.9
(-0.7)
M 		38.9
(-1.9)
P 		54.4
(0.2)
P 		75.2
(3)
P 		45
avr 43.7
(-2.2) 		61.1
(1.5) 		39.9
(-3) 		43.4
(-2.3) 		61.3
(1.6) 		68
(3) 		28
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177310_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19097
Sequence Type Exemplar sequence
Representative Public ID Y43B11AR.E NCBI
Target Description Y43B11AR.E /REP_DB=WormBase Gene ID /WP=CE24281 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60572.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068700
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y43B11AR.1 ENSEMBL cdna:known chromosome:CEL140:IV:7081024:7082193:1 gene:Y43B11AR.1 None
SNAP00000030379 ENSEMBL cdna:SNAP chromosome:CEL140:IV:7081523:7082048:1 None
GENEFINDER00000030387 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:7081523:7082048:1 None
NM_068700 NCBI Caenorhabditis elegans Y43B11AR.1 (Y43B11AR.1) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:7081029-7084350(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y43B11AR.1
Entrez Gene 189846 Entrez gene
SwissProt Q9N3X4 EMBL-EBI
WormBase CE27633 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60572 Hypothetical protein Y43B11AR.1 [Caenorhabditis elegans] ref|NP_501101.1| Y43B11AR.1 [Caenorhabditis elegans] 6.0E-74
blast AAF60572 Hypothetical protein Y43B11AR.1 [Caenorhabditis elegans] ref|NP_501101.1| Y43B11AR.1 [Caenorhabditis elegans] 2.0E-23
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_501101.1 2 20-39,102-119
Y43B11AR.1 2 20-39,102-119
Sequence
Target Sequence 
>C. ELEGANS:177310_AT
atctgctggaggatctgctgtcgatgtatctactgttgtcccagtccattcatcagatat
tcctgcttcatctccaactatcgaaacaactacaaaaagctcaacaactttctcagctca
acttctcgccgtcgccgtccttgtcctacatgctgcaaacttaccgagtggcgaaggagt
gtccagcagaatccttgatgtggatgatgtcagatgctcctgggagacgctcacgatgtc
cgataattccgacacgaccaacgttacgtcctccagtgacgtaggccaaatttcctggct
cgaacttgacggagtcggtgatcttctgggtgctgatgttgaaaacaatggtgtcgttaa
ccttgacatgtgggtctgggtagcggatggtgcgtccgtcagtggtggtgaggactggaa
ctcccttgttgacggtgcggacagacttgaccttgcagagcttgaagtcggcctcggcag
cttggattctgtggacgacgtatcttcccttggtatcgtagagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATCTGCTGGAGGATCTGCTGTCGAT 59 35 492 Antisense
GTCGATGTATCTACTGTTGTCCCAG 573 473 511 Antisense
GTCCCAGTCCATTCATCAGATATTC 699 475 529 Antisense
GAGTGTCCAGCAGAATCCTTGATGT 377 399 668 Antisense
ACGCTCACGATGTCCGATAATTCCG 36 93 718 Antisense
ATTTCCTGGCTCGAACTTGACGGAG 325 15 781 Antisense
CTTGACGGAGTCGGTGATCTTCTGG 16 219 796 Antisense
TGAGGACTGGAACTCCCTTGTTGAC 544 565 900 Antisense
ACAGACTTGACCTTGCAGAGCTTGA 147 107 932 Antisense
GATTCTGTGGACGACGTATCTTCCC 531 431 976 Antisense
GTATCTTCCCTTGGTATCGTAGAGC 509 453 991 Antisense
Sequence Source Affymetrix Proprietary Database