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[177307_at]

Description Y37E11AM.B /REP_DB=WormBase Gene ID /WP=CE21542 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59457.1
Cluster 6grp_total > 0      4grp_total > 15      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 189.2
(3)
A 		98.8
(-3)
A 		104.8
(-2.6)
A 		187.7
(2.9)
A 		90
B 131.2
(-2.3)
A 		128
(-3)
A 		144.2
(0.8)
A 		153.8
(3)
A 		26
C 168.8
(3)
A 		124.2
(-3)
A 		134
(-1.7)
A 		166.1
(2.6)
A 		45
avr 163.1
(2.3) 		117
(-3) 		127.7
(-1.8) 		169.2
(3) 		52

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 145
1 2 3 4 5 6 range
A 34.9
(-3)
A 		142.3
(1.8)
A 		131
(1.3)
A 		167.8
(3)
A 		143.7
(1.9)
A 		146.1
(2)
A 		133
B 141.9
(1.2)
A 		169.3
(3)
A 		78.5
(-3)
A 		158.9
(2.3)
A 		129.1
(0.3)
A 		133
(0.6)
A 		91
C 180.2
(3)
A 		164.5
(1.1)
A 		151.5
(-0.4)
A 		132.2
(-2.7)
A 		129.8
(-3)
A 		145.5
(-1.1)
A 		50
avr 119
(-3) 		158.7
(3) 		120.3
(-2.8) 		153
(2.1) 		134.2
(-0.7) 		141.5
(0.4) 		40
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 47
1 2 3 4 range
A 68.9
(3)
A 		21.5
(-3)
A 		27.4
(-2.3)
A 		27.5
(-2.2)
A 		47
B 41.8
(3)
A 		31.6
(-3)
A 		33.4
(-1.9)
A 		32.8
(-2.3)
A 		10
C 55.9
(3)
A 		35.7
(-1.3)
A 		46.7
(1)
A 		28
(-3)
A 		28
avr 55.5
(3) 		29.6
(-3) 		35.8
(-1.5) 		29.4
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 60
1 2 3 4 5 6 range
A 6.4
(-3)
A 		50.6
(3)
A 		28.5
(0)
A 		42.6
(1.9)
A 		43.4
(2)
A 		35.6
(1)
A 		44
B 49.4
(1.9)
A 		56.4
(3)
A 		19.1
(-3)
A 		42.1
(0.7)
A 		52.5
(2.4)
A 		49.6
(1.9)
A 		37
C 66.8
(3)
A 		50.2
(0.5)
A 		38.6
(-1.2)
A 		26.6
(-3)
A 		42
(-0.7)
A 		48.7
(0.3)
A 		40
avr 40.9
(0.1) 		52.4
(3) 		28.7
(-3) 		37.1
(-0.9) 		46
(1.4) 		44.6
(1) 		24
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177307_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19249
Sequence Type Exemplar sequence
Representative Public ID Y37E11AM.B NCBI
Target Description Y37E11AM.B /REP_DB=WormBase Gene ID /WP=CE21542 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59457.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068003
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000039234 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3716287:3725345:-1 10/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_068002 3/11 Cross Hyb Matching Probes None
NM_068003 8/11 Cross Hyb Matching Probes None
GENEFINDER00000039237 7/11 Cross Hyb Matching Probes None
GENEFINDER00000039240 3/11 Cross Hyb Matching Probes None
Y37E11AM.3.2 3/11 Cross Hyb Matching Probes None
Y37E11AM.3.1 3/11 Cross Hyb Matching Probes None
Y37E11AM.2 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3721639-3725637(-) 93.17 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAE63759 Hypothetical protein CBG08294 [Caenorhabditis briggsae] 1.0E-141
blast CAE63757 Hypothetical protein CBG08292 [Caenorhabditis briggsae] 4.0E-72
blast AAK73905 Hypothetical protein Y37E11AM.2 [Caenorhabditis elegans] ref|NP_500404.1| Y37E11AM.2 [Caenorhabditis elegans] 3.0E-70
Protein Domains
Database ID Description E-Value
Pfam IPR002198 EMBL-EBI Short-chain dehydrogenase/reductase SDR 4.9E-38
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000039234 1 522-539
Sequence
Target Sequence 
>C. ELEGANS:177307_AT
ggatctcagcgagcgcgaggaccaaaccagcgacccggacgaggaagacactgagtgtcg
tgcaaacacatggattgtgacggtttcgaatcgcatatctcatccagtgatgaatcatat
tccgaagataataaaggacgtgaagccgacgatgagcaaagtgattgggttggagataca
acgcccacgcgtaatcccttcgaatcaccatttgctcgagaaggtggccgcggtgagctc
atcctggagacgcgattccgtgatcgagcatcaagctccctgcttcaacgatatctgtac
aaatatcatctggaagttgtccgccgtcaccgtggatcgattattcttcgaaagaagttc
gagacgccgtccacgtcgaattcccaaattttatatgagaaaatccgacgccagaggaca
tcaagtggaagcggatttcgctcgtttaggagtccgaattgagttgcctgataagaggcc
attcccaatcgatcaattcgaattgttcgtccacgaggctattcgagag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGATCTCAGCGAGCGCGAGGACCAA 46 513 231 Antisense
TCGAATCGCATATCTCATCCAGTGA 442 601 316 Antisense
GAGATACAACGCCCACGCGTAATCC 139 397 403 Antisense
TCCCTTCGAATCACCATTTGCTCGA 19 599 425 Antisense
TGAGCTCATCCTGGAGACGCGATTC 581 569 464 Antisense
GACGCGATTCCGTGATCGAGCATCA 37 381 479 Antisense
TCCCTGCTTCAACGATATCTGTACA 434 597 507 Antisense
GCCGTCACCGTGGATCGATTATTCT 699 283 553 Antisense
GGATTTCGCTCGTTTAGGAGTCCGA 539 507 663 Antisense
GATAAGAGGCCATTCCCAATCGATC 346 423 700 Antisense
GTTCGTCCACGAGGCTATTCGAGAG 234 443 735 Antisense
Sequence Source Affymetrix Proprietary Database