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[177306_s_at]

Description Y37E11AM.A /REP_DB=WormBase Gene ID /WP=CE25239 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59456.1
Cluster 6grp_total > 65      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 45
1 2 3 4 range
A 15.9
(-1.7)
A 		22.3
(-0.2)
A 		9.9
(-3)
A 		36.6
(3)
A 		27
B 3.7
(-2.5)
A 		7.1
(-0.1)
A 		3
(-3)
A 		11.6
(3)
A 		9
C 21.1
(-0.8)
A 		47.9
(3)
A 		5.3
(-3)
A 		7.3
(-2.7)
A 		43
avr 13.6
(-0.7) 		25.8
(3) 		6.1
(-3) 		18.5
(0.8) 		20

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 33
1 2 3 4 5 6 range
A 7.3
(-1.4)
A 		4.3
(-2.5)
A 		19.3
(3)
A 		3
(-3)
A 		3.5
(-2.8)
A 		5.6
(-2)
A 		16
B 18.7
(3)
A 		2.9
(-3)
A 		9.7
(-0.4)
A 		12.4
(0.6)
A 		10.5
(-0.1)
A 		13
(0.8)
A 		16
C 2.7
(-3)
A 		19
(-0.1)
A 		3.8
(-2.8)
A 		27.1
(1.4)
A 		3.2
(-2.9)
A 		35.9
(3)
A 		33
avr 9.6
(-1.1) 		8.7
(-1.6) 		10.9
(-0.5) 		14.2
(1.1) 		5.7
(-3) 		18.2
(3) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 5.8
(3)
A 		4.8
(1.1)
A 		2.6
(-3)
A 		5.4
(2.3)
A 		3
B 1.2
(-1.3)
A 		1.8
(0.7)
A 		0.7
(-3)
A 		2.5
(3)
A 		2
C 7
(-0.2)
A 		13.8
(3)
A 		1.8
(-2.7)
A 		1.2
(-3)
A 		13
avr 4.7
(0.5) 		6.8
(3) 		1.7
(-3) 		3
(-1.5) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 11
1 2 3 4 5 6 range
A 1.3
(-2.1)
A 		1.5
(-1.8)
A 		4.2
(3)
A 		0.8
(-3)
A 		1.1
(-2.5)
A 		1.4
(-1.9)
A 		3
B 6.5
(3)
A 		1
(-3)
A 		2.4
(-1.5)
A 		3.3
(-0.5)
A 		4.3
(0.6)
A 		4.8
(1.1)
A 		6
C 1
(-3)
A 		5.8
(-0.4)
A 		1
(-3)
A 		5.4
(-0.6)
A 		1
(-3)
A 		12
(3)
A 		11
avr 2.9
(-1.8) 		2.8
(-2) 		2.5
(-2.4) 		3.2
(-1.4) 		2.1
(-3) 		6.1
(3) 		4
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177306_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19181
Sequence Type Exemplar sequence
Representative Public ID Y37E11AM.A NCBI
Target Description Y37E11AM.A /REP_DB=WormBase Gene ID /WP=CE25239 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59456.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Genome Target Overlap based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade B annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068005, NM_171307, NM_068006
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11AR.3c ENSEMBL cdna:known chromosome:CEL140:IV:3735889:3738059:-1 gene:Y37E11AR.3 None
NM_068006 NCBI Caenorhabditis elegans Y37E11AR.3a (Y37E11AR.3) mRNA, complete cds. None
NM_171307 NCBI Caenorhabditis elegans Y37E11AR.3c (Y37E11AR.3) mRNA, complete cds. None
GENEFINDER00000021674 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3735889:3738014:-1 None
SNAP00000021665 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3735889:3738761:-1 None
Y37E11AR.3b ENSEMBL cdna:known chromosome:CEL140:IV:3735836:3738761:-1 gene:Y37E11AR.3 None
Y37E11AR.3a ENSEMBL cdna:known chromosome:CEL140:IV:3735889:3738912:-1 gene:Y37E11AR.3 None
NM_068005 NCBI Caenorhabditis elegans Y37E11AR.3b (Y37E11AR.3) mRNA, complete cds. None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3731617-3736561(-) 96.38 100.0
Public Domain and Genome References
Ensembl Y37E11AR.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK73907 Hypothetical protein Y37E11AR.3b [Caenorhabditis elegans] ref|NP_500406.1| Y37E11AR.3b [Caenorhabditis elegans] 0.0
blast AAM97964 Hypothetical protein Y37E11AR.3c [Caenorhabditis elegans] ref|NP_741361.1| Y37E11AR.3c [Caenorhabditis elegans] 0.0
blast AAK68433 Hypothetical protein Y37E11AR.3a [Caenorhabditis elegans] ref|NP_500407.1| Y37E11AR.3a [Caenorhabditis elegans] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177306_S_AT
gacaaaaaaaatgtctgccgcaccccatatttattaacagggtccaaaatcgaaaaattc
gggtacaagccggcggcgatgatcactctgaccacttcggcgattttttctctgaaaaaa
aaacagaaaattgttaaaatttttcgggaaaaattccaaaatttcgatttttcaaaaaaa
aaacctaagaacaaaaatctgacaactgccaaaattttggaaaaaaaacttgaaccgttt
ttttttattcctgaaaaaaagaaaaaatcgctccaattttggatttattca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACAAAAAAAATGTCTGCCGCACCC 6 359 1156 Antisense
GCCGCACCCCATATTTATTAACAGG 305 285 1172 Antisense
TTCGGGTACAAGCCGGCGGCGATGA 89 471 1213 Antisense
TACAAGCCGGCGGCGATGATCACTC 334 641 1219 Antisense
CTCTGACCACTTCGGCGATTTTTTC 329 231 1241 Antisense
TGACCACTTCGGCGATTTTTTCTCT 28 569 1244 Antisense
CACTTCGGCGATTTTTTCTCTGAAA 601 195 1248 Antisense
ACAAAAATCTGACAACTGCCAAAAT 509 109 1346 Antisense
AATCTGACAACTGCCAAAATTTTGG 682 167 1351 Antisense
GAAAAAATCGCTCCAATTTTGGATT 519 355 1416 Antisense
ATCGCTCCAATTTTGGATTTATTCA 435 35 1422 Antisense
Sequence Source Affymetrix Proprietary Database