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[177305_at]

Description Y39G10AL.C /REP_DB=WormBase Gene ID /WP=CE25268 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59490.1
Cluster 6grp_total > 39      4grp_total > 32      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 63
1 2 3 4 range
A 9.9
(-3)
A 		18.7
(1.8)
A 		21
(3)
A 		12
(-1.9)
A 		11
B 30.7
(0.2)
A 		44
(2.4)
A 		47.5
(3)
A 		11.2
(-3)
A 		36
C 18.4
(-2.4)
A 		12.2
(-3)
A 		43
(0.1)
A 		72.4
(3)
A 		60
avr 19.7
(-3) 		25
(-1.2) 		37.2
(3) 		31.9
(1.2) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 37
1 2 3 4 5 6 range
A 35.2
(3)
A 		26.9
(1)
A 		17.3
(-1.3)
A 		10.1
(-3)
A 		27.3
(1.1)
A 		22.2
(-0.1)
A 		25
B 6.9
(-3)
A 		6.7
(-3)
A 		18.1
(-1)
A 		11.4
(-2.2)
A 		11.5
(-2.2)
A 		41.4
(3)
A 		35
C 21.2
(0.1)
A 		37.3
(3)
A 		19.1
(-0.3)
A 		10.2
(-1.9)
A 		21.4
(0.1)
A 		4.2
(-3)
A 		33
avr 21.1
(1.8) 		23.6
(3) 		18.2
(0.5) 		10.6
(-3) 		20.1
(1.4) 		22.6
(2.5) 		13
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 13
1 2 3 4 range
A 3.6
(0)
A 		4.1
(0.8)
A 		5.5
(3)
A 		1.7
(-3)
A 		4
B 9.8
(2.2)
A 		10.9
(2.9)
A 		11
(3)
A 		2.4
(-3)
A 		9
C 6.1
(-1.6)
A 		3.5
(-3)
A 		15
(3)
A 		12.2
(1.5)
A 		12
avr 6.5
(-1.7) 		6.2
(-2.1) 		10.5
(3) 		5.4
(-3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 6.5
(0.3)
A 		9.6
(3)
A 		3.8
(-2)
A 		2.6
(-3)
A 		8.2
(1.8)
A 		5.4
(-0.6)
A 		7
B 2.4
(-2.9)
A 		2.2
(-3)
A 		4.4
(-2)
A 		3
(-2.6)
A 		4.7
(-1.9)
A 		15.4
(3)
A 		13
C 7.9
(0.9)
A 		11.4
(3)
A 		4.9
(-0.9)
A 		2.1
(-2.6)
A 		6.9
(0.3)
A 		1.4
(-3)
A 		10
avr 5.6
(0.5) 		7.7
(3) 		4.4
(-0.9) 		2.6
(-3) 		6.6
(1.7) 		7.4
(2.6) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177305_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18680
Sequence Type Exemplar sequence
Representative Public ID Y39G10AL.C NCBI
Target Description Y39G10AL.C /REP_DB=WormBase Gene ID /WP=CE25268 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59490.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058550(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058550 NCBI Caenorhabditis elegans Y39G10AL.1 (Y39G10AL.1) mRNA, complete cds. 9/11 None
SNAP00000021533 ENSEMBL cdna:SNAP chromosome:CEL140:I:2274322:2280794:1 9/11 None
GENEFINDER00000021545 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2279848:2280801:1 9/11 None
Y39G10AL.1 ENSEMBL cdna:known chromosome:CEL140:I:2279835:2280868:1 gene:Y39G10AL.1 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2280291-2280801(+) 94.71 100.0
Public Domain and Genome References
Gene Title
Ensembl Y39G10AL.1
Entrez Gene 171783 Entrez gene
SwissProt Q9N402 EMBL-EBI
WormBase CE26987 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59490 Hypothetical protein Y39G10AL.1 [Caenorhabditis elegans] ref|NP_490951.1| Y39G10AL.1 [Caenorhabditis elegans] 9.0E-74
blast AAF59490 Hypothetical protein Y39G10AL.1 [Caenorhabditis elegans] ref|NP_490951.1| Y39G10AL.1 [Caenorhabditis elegans] 2.0E-58
Sequence
Target Sequence 
>C. ELEGANS:177305_AT
acaacgatgctccgaaattccgatattttttcaggacctgagagatacaatcaagcattt
caccgctgccctcaatcgcgaaaagaaaagagtcactggagaagagccccaagagcaaat
tgctgctctacaagcattgctccgagcctccatcgccacggaggagaagctccatgctga
gaatctcgagctctcggagctcgcgaaaaagcacagaaaagaagcagaggaaatccggca
gaagttcaaggattccgaggaacagttgaaaagcgagcttatggatattgtgaatgattt
gatggccagagagcagaagaagcggcaagagtaccaggaagagcaggatgagcaggcttt
cgata

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ACAACGATGCTCCGAAATTCCGATA 525 113 75 Antisense
ATTCCGATATTTTTTCAGGACCTGA 309 7 91 Antisense
TACAATCAAGCATTTCACCGCTGCC 41 643 120 Antisense
CCGCTGCCCTCAATCGCGAAAAGAA 411 263 137 Antisense
GAGCCCCAAGAGCAAATTGCTGCTC 646 383 178 Antisense
TGCTGCTCTACAAGCATTGCTCCGA 192 583 195 Antisense
AGCCTCCATCGCCACGGAGGAGAAG 673 81 219 Antisense
GAGGAGAAGCTCCATGCTGAGAATC 21 405 235 Antisense
GCTGAGAATCTCGAGCTCTCGGAGC 590 295 250 Antisense
AGCTCTCGGAGCTCGCGAAAAAGCA 230 81 263 Antisense
GAGCAGGATGAGCAGGCTTTCGATA 645 389 415 Antisense
Sequence Source Affymetrix Proprietary Database