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[177304_at]

Description M163.6 /REP_DB=WormBase Gene ID /WP=CE12456 /TR=Q93904 /GB=CAB01895.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 24      4grp_total > 25      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 10
1 2 3 4 range
A 3.6
(-3)
A 		6.2
(-1.1)
A 		8.8
(0.9)
A 		11.6
(3)
A 		8
B 3.7
(-3)
A 		9
(0.4)
A 		7
(-0.9)
A 		13.1
(3)
A 		9
C 4.1
(-3)
A 		9.5
(3)
A 		5.6
(-1.3)
A 		4.5
(-2.6)
A 		5
avr 3.8
(-3) 		8.2
(1.5) 		7.1
(0.4) 		9.7
(3) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 6.8
(3)
A 		4.1
(-1.6)
A 		4.3
(-1.3)
A 		5.4
(0.6)
A 		3.3
(-3)
A 		3.8
(-2.1)
A 		4
B 3.8
(-0.4)
A 		5
(3)
A 		3.4
(-1.6)
A 		2.9
(-3)
A 		3.3
(-1.9)
A 		3.9
(-0.1)
A 		2
C 4.8
(1.3)
A 		4.4
(0.1)
A 		5.4
(3)
A 		4.3
(-0.1)
A 		3.7
(-1.9)
A 		3.3
(-3)
A 		2
avr 5.1
(3) 		4.5
(0.9) 		4.4
(0.5) 		4.2
(-0.2) 		3.4
(-3) 		3.7
(-1.9) 		2
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2
1 2 3 4 range
A 1.3
(-3)
A 		1.4
(-2.4)
A 		2.3
(3)
A 		1.7
(-0.6)
A 		1
B 1.2
(-3)
A 		2.2
(0.8)
A 		1.6
(-1.5)
A 		2.8
(3)
A 		2
C 1.4
(-1.1)
A 		2.7
(3)
A 		1.9
(0.5)
A 		0.8
(-3)
A 		2
avr 1.3
(-3) 		2.1
(3) 		1.9
(1.5) 		1.8
(0.8) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1
1 2 3 4 5 6 range
A 1.3
(1.8)
A 		1.4
(3)
A 		0.9
(-3)
A 		1.4
(3)
A 		1
(-1.8)
A 		0.9
(-3)
A 		0
B 1.3
(0.3)
A 		1.7
(3)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1.4
(1)
A 		1.5
(1.7)
A 		1
C 1.8
(3)
A 		1.4
(0.3)
A 		1.4
(0.3)
A 		0.9
(-3)
A 		1.2
(-1)
A 		1.1
(-1.7)
A 		1
avr 1.5
(3) 		1.5
(3) 		1
(-3) 		1
(-3) 		1.2
(-0.6) 		1.2
(-0.6) 		1
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177304_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17674
Sequence Type Exemplar sequence
Representative Public ID M163.6 NCBI
Target Description M163.6 /REP_DB=WormBase Gene ID /WP=CE12456 /TR=Q93904 /GB=CAB01895.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078005(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078005 NCBI Caenorhabditis elegans M163.6 (M163.6) mRNA, complete cds. 11/11 None
GENEFINDER00000011170 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14462776:14464319:1 9/11 None
M163.6 ENSEMBL cdna:known chromosome:CEL140:X:14462776:14463927:1 gene:M163.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011154 6/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14462775-14463927(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M163.6
Entrez Gene 187494 Entrez gene
SwissProt Q93904 EMBL-EBI
WormBase CE12456 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01895 Hypothetical protein M163.6 [Caenorhabditis elegans] ref|NP_510406.1| M163.6 [Caenorhabditis elegans] 8.0E-82
blast CAB01895 Hypothetical protein M163.6 [Caenorhabditis elegans] ref|NP_510406.1| M163.6 [Caenorhabditis elegans] 2.0E-59
Sequence
Target Sequence 
>C. ELEGANS:177304_AT
aaggataaccattccggatgccaccatgtctgcccaacagttgttagggaggccgatgct
tatcgtgtcggaccaggcaaagatatctgttttggatatttatttcacattggcggggca
ccgactgatgtgattggagtggtcgtcgaaggcatgctcacccgccaatgccctcttctg
aaaaagcggctcgtttccgcgtacatgaccaaaaactggtcgctaggaccgtcaaacgca
catttccacgacgcggatgaaccacttcaactccatcatccagcaccacgaaattgggga
aaaggtggagttggagtcgttcgtgtcgggctccgtcgtctgagtttacatgga

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGGATAACCATTCCGGATGCCACC 639 157 79 Antisense
CACCATGTCTGCCCAACAGTTGTTA 605 201 100 Antisense
GGCCGATGCTTATCGTGTCGGACCA 255 541 129 Antisense
CACATTGGCGGGGCACCGACTGATG 262 197 184 Antisense
GCCAATGCCCTCTTCTGAAAAAGCG 365 277 242 Antisense
TCGTTTCCGCGTACATGACCAAAAA 602 601 269 Antisense
GCTAGGACCGTCAAACGCACATTTC 149 303 300 Antisense
GCACATTTCCACGACGCGGATGAAC 295 317 316 Antisense
GCGGATGAACCACTTCAACTCCATC 459 293 331 Antisense
AAGGTGGAGTTGGAGTCGTTCGTGT 543 157 380 Antisense
GCTCCGTCGTCTGAGTTTACATGGA 65 299 408 Antisense
Sequence Source Affymetrix Proprietary Database