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[177303_at]

Description R52.6 /REP_DB=WormBase Gene ID /WP=CE12834 /TR=O17291 /GB=AAB71063.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 46      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 3.4
(-3)
A 		7.3
(3)
A 		3.8
(-2.4)
A 		6.3
(1.5)
A 		4
B 6
(3)
A 		1.7
(-2.6)
A 		4
(0.4)
A 		1.4
(-3)
A 		5
C 19.1
(3)
A 		7.5
(-1.1)
A 		2
(-3)
A 		3.5
(-2.5)
A 		17
avr 9.5
(3) 		5.5
(-0.9) 		3.3
(-3) 		3.7
(-2.6) 		6

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 9
1 2 3 4 5 6 range
A 8.1
(3)
A 		2.3
(-3)
A 		6.3
(1.1)
A 		5
(-0.2)
A 		4.8
(-0.4)
A 		2.7
(-2.6)
A 		6
B 3.9
(-1)
A 		4.2
(-0.8)
A 		2.2
(-2.1)
A 		6.2
(0.5)
A 		10
(3)
A 		0.8
(-3)
A 		9
C 3
(0)
A 		4.6
(3)
A 		4.6
(3)
A 		2.8
(-0.4)
A 		1.4
(-3)
A 		1.8
(-2.3)
A 		3
avr 5
(2.3) 		3.7
(0.2) 		4.4
(1.3) 		4.7
(1.8) 		5.4
(3) 		1.8
(-3) 		4
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 1.3
(0.4)
A 		1.6
(3)
A 		1
(-2.1)
A 		0.9
(-3)
A 		1
B 1.9
(3)
A 		0.4
(-2.6)
A 		0.9
(-0.8)
A 		0.3
(-3)
A 		2
C 6.3
(3)
A 		2.1
(-1.4)
A 		0.7
(-2.9)
A 		0.6
(-3)
A 		6
avr 3.2
(3) 		1.4
(-1.2) 		0.9
(-2.3) 		0.6
(-3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 4
1 2 3 4 5 6 range
A 1.5
(3)
A 		0.8
(-2.3)
A 		1.4
(2.3)
A 		1.3
(1.5)
A 		1.5
(3)
A 		0.7
(-3)
A 		1
B 1.4
(-1.3)
A 		1.4
(-1.3)
A 		0.5
(-2.7)
A 		1.7
(-0.8)
A 		4.1
(3)
A 		0.3
(-3)
A 		4
C 1.1
(1)
A 		1.4
(3)
A 		1.2
(1.7)
A 		0.6
(-2.3)
A 		0.5
(-3)
A 		0.6
(-2.3)
A 		1
avr 1.3
(0.2) 		1.2
(-0.2) 		1
(-1) 		1.2
(-0.2) 		2
(3) 		0.5
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177303_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.5436
Sequence Type Exemplar sequence
Representative Public ID R52.6 NCBI
Target Description R52.6 /REP_DB=WormBase Gene ID /WP=CE12834 /TR=O17291 /GB=AAB71063.1 /SUBMIT=ST.LOUIS /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_061784(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_061784 NCBI Caenorhabditis elegans R52.6 (R52.6) mRNA, complete cds. 11/11 None
R52.6 ENSEMBL cdna:known chromosome:CEL140:II:2112275:2113049:-1 gene:R52.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000034565 8/11 Cross Hyb Matching Probes None
GENEFINDER00000034576 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:2112273-2113048(-) 91.67 100.0
Public Domain and Genome References
Gene Title
Ensembl R52.6
Entrez Gene 187880 Entrez gene
SwissProt O17291 EMBL-EBI
WormBase CE12834 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAB71063 Hypothetical protein R52.6 [Caenorhabditis elegans] ref|NP_494185.1| R52.6 [Caenorhabditis elegans] 4.0E-66
blast AAB71061 Hypothetical protein R52.5 [Caenorhabditis elegans] ref|NP_494184.1| R52.5 [Caenorhabditis elegans] 3.0E-21
blast AAB37906 Hypothetical protein F07E5.7 [Caenorhabditis elegans] ref|NP_494171.1| F07E5.7 [Caenorhabditis elegans] 3.0E-18
Protein Domains
Database ID Description E-Value
Pfam IPR003326 EMBL-EBI Protein of unknown function DUF130 1.5E-15
Sequence
Target Sequence 
>C. ELEGANS:177303_AT
tcattcttttccaaacacctttttgatatgaatattttctgttctatagttctatgtttt
gtaattactataacagaatgttgtatgagaactattccgccggatgatgcctatatttca
agcactttgccatatgaggagactacggaaatgatgacaacaatggaaacgtccaccatg
acagaaaaagtatgcccagagatgccagccgccaccgcgtgtatggatttgacaacactt
ggatggacattggaattaggagaagtagacggatgtcctgtggtacagtgcaaaggtggc
ctgattccatgggtgctttccagaaattatttgattcaaccgaagctatatcctggcata
gatgacttgcatttaattgtgagtggtctcaaatctttcaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCATTCTTTTCCAAACACCTTTTTG 27 619 28 Antisense
GCCTATATTTCAAGCACTTTGCCAT 582 281 136 Antisense
AAAGTATGCCCAGAGATGCCAGCCG 211 123 214 Antisense
CCGCCACCGCGTGTATGGATTTGAC 680 259 236 Antisense
GGATTTGACAACACTTGGATGGACA 704 509 252 Antisense
GTAGACGGATGTCCTGTGGTACAGT 23 457 292 Antisense
GTGCAAAGGTGGCCTGATTCCATGG 564 479 315 Antisense
GATTCCATGGGTGCTTTCCAGAAAT 634 433 330 Antisense
TCAACCGAAGCTATATCCTGGCATA 483 631 363 Antisense
ATCCTGGCATAGATGACTTGCATTT 569 39 377 Antisense
TTGTGAGTGGTCTCAAATCTTTCAA 253 705 404 Antisense
Sequence Source Affymetrix Proprietary Database