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[177302_at]

Description M163.7 /REP_DB=WormBase Gene ID /WP=CE12458 /TR=Q93905 /GB=CAB01896.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_total > 05      4grp_total > 0      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 104
1 2 3 4 range
A 49.3
(-0.5)
A 		6.8
(-3)
A 		52.1
(-0.4)
A 		110.8
(3)
A 		104
B 28.2
(-1.8)
A 		14.5
(-3)
A 		46.4
(-0.2)
A 		83.8
(3)
A 		69
C 22.7
(-3)
A 		44.5
(-0.3)
A 		40
(-0.9)
A 		71
(3)
A 		48
avr 33.4
(-2) 		21.9
(-3) 		46.2
(-0.8) 		88.5
(3) 		67

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 54.5
(2.2)
A 		16.5
(-2.1)
A 		8.4
(-3)
A 		10
(-2.8)
A 		61.4
(3)
A 		9
(-2.9)
A 		53
B 65.7
(3)
A 		35.3
(-0.9)
A 		42.2
(-0)
A 		34.3
(-1)
A 		19.1
(-3)
A 		20
(-2.9)
A 		47
C 26.4
(-1.1)
A 		60.4
(3)
A 		10.1
(-3)
A 		27.4
(-0.9)
A 		10.2
(-3)
A 		19.9
(-1.8)
A 		50
avr 48.9
(3) 		37.4
(0.9) 		20.2
(-2.3) 		23.9
(-1.6) 		30.2
(-0.4) 		16.3
(-3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 17.9
(3)
A 		1.5
(-3)
A 		13.6
(1.4)
A 		16.2
(2.4)
A 		16
B 9
(-0.7)
A 		3.6
(-3)
A 		10.7
(-0)
A 		17.9
(3)
A 		14
C 7.5
(-3)
A 		12.8
(2)
A 		13.9
(3)
A 		12
(1.2)
A 		6
avr 11.5
(0.5) 		6
(-3) 		12.7
(1.3) 		15.4
(3) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 10
(-0.1)
A 		5.9
(-1.5)
A 		1.8
(-3)
A 		2.5
(-2.7)
A 		18.5
(3)
A 		2.2
(-2.9)
A 		17
B 22.9
(3)
A 		11.7
(-1.4)
A 		10.3
(-1.9)
A 		9.1
(-2.4)
A 		7.8
(-2.9)
A 		7.5
(-3)
A 		15
C 9.8
(-0.3)
A 		18.4
(3)
A 		2.6
(-3)
A 		5.5
(-1.9)
A 		3.3
(-2.7)
A 		6.7
(-1.4)
A 		16
avr 14.2
(3) 		12
(1.6) 		4.9
(-3) 		5.7
(-2.5) 		9.9
(0.2) 		5.5
(-2.6) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177302_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17822
Sequence Type Exemplar sequence
Representative Public ID M163.7 NCBI
Target Description M163.7 /REP_DB=WormBase Gene ID /WP=CE12458 /TR=Q93905 /GB=CAB01896.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078006(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078006 NCBI Caenorhabditis elegans M163.7 (M163.7) mRNA, complete cds. 11/11 None
GENEFINDER00000011167 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14465812:14467578:1 11/11 None
M163.7 ENSEMBL cdna:known chromosome:CEL140:X:14464732:14467534:1 gene:M163.7 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000011155 2/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14464731-14467534(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M163.7
Entrez Gene 187495 Entrez gene
SwissProt Q93905 EMBL-EBI
WormBase CE12458 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01896 Hypothetical protein M163.7 [Caenorhabditis elegans] ref|NP_510407.1| M163.7 [Caenorhabditis elegans] 1.0E-146
blast CAB01896 Hypothetical protein M163.7 [Caenorhabditis elegans] ref|NP_510407.1| M163.7 [Caenorhabditis elegans] 1.0E-39
Sequence
Target Sequence 
>C. ELEGANS:177302_AT
gatctcagcatttctcgatgctatcaaaaactgggaggaccctgatttttgcttgccaga
ggatgagatgggaggttttcagtacttttttcttcactccgagacagttgtaagtaattc
gaaacttacagagcatagtcgcattaaggttgaactctcctggtggttgccaataagaaa
acatgccggcggtaagaattacgaaatgtccaagacgttcagaattttgaaacttcttac
tgaaaacatcattgaatctatgttcatacaaatcactcatatattcgaacaaaatgtgcc
attttcaagattgttgtttttattaacaggtgcaaaacaacagaaaaagaaaaaagactc
ggtcaccaggaacatggaagcacgctacgctcccgtggagggatcccttcgctcgaagcc
tatccagtcgagaatcgatgtcagtggatcaaccagcgcaccgcctccgtttttccacct
cttccaatcgaatggtcaaacttctgctcagaacccctttt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATCTCAGCATTTCTCGATGCTATC 243 419 210 Antisense
GACCCTGATTTTTGCTTGCCAGAGG 350 373 247 Antisense
GAGATGGGAGGTTTTCAGTACTTTT 549 343 274 Antisense
ACTTTTTTCTTCACTCCGAGACAGT 274 99 293 Antisense
TGAACTCTCCTGGTGGTTGCCAATA 644 573 360 Antisense
AAGACTCGGTCACCAGGAACATGGA 667 151 563 Antisense
GGAACATGGAAGCACGCTACGCTCC 602 527 578 Antisense
GAAGCCTATCCAGTCGAGAATCGAT 336 345 624 Antisense
ATGTCAGTGGATCAACCAGCGCACC 393 47 647 Antisense
TCCACCTCTTCCAATCGAATGGTCA 176 587 683 Antisense
CAAACTTCTGCTCAGAACCCCTTTT 366 187 706 Antisense
Sequence Source Affymetrix Proprietary Database