[Home] | [Total List]

[177301_s_at]

Description Y37E11AM.D /REP_DB=WormBase Gene ID /WP=CE21548 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59459.1
Cluster 6grp_highest_10_10 > 86      6grp_high1_10_10 > 67      4grp_high_8_8 > 27      6grp_highest_nonorm > 90      6grp_total > 67      4grp_total > 29      6grp_highest_sub > Da      6grp_high1_sub > Da      6grp_total_sub > Increase      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 170.5
(3)
P 		159.5
(-0.4)
P 		160.3
(-0.1)
A 		150.9
(-3)
A 		20
B 155.1
(2.3)
P 		160.7
(3)
P 		114.3
(-3)
P 		145.1
(1)
P 		46
C 179.3
(1.2)
P 		185.1
(1.7)
P 		136.7
(-3)
M 		198.1
(3)
P 		61
avr 168.3
(3) 		168.4
(3) 		137.1
(-3) 		164.7
(2.3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 149
1 2 3 4 5 6 range
A 157.4
(-1.6)
P 		202.6
(0.5)
P 		127.2
(-3)
P 		174.1
(-0.8)
P 		127.6
(-3)
P 		256.9
(3)
P 		130
B 140.6
(-1.4)
P 		126.8
(-2.1)
P 		142.7
(-1.3)
P 		108.3
(-3)
P 		121.4
(-2.3)
P 		227.8
(3)
P 		120
C 170.6
(-0.3)
P 		132.8
(-2.3)
P 		184
(0.4)
P 		120
(-3)
P 		195.3
(1)
P 		233.2
(3)
P 		113
avr 156.2
(-1.7) 		154.1
(-1.9) 		151.3
(-2) 		134.1
(-3) 		148.1
(-2.2) 		239.3
(3) 		105
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 40
1 2 3 4 range
A 62.1
(3)
P 		34.6
(-1.1)
P 		41.9
(-0)
A 		22.1
(-3)
A 		40
B 49.5
(3)
P 		39.7
(0.4)
P 		26.5
(-3)
P 		30.9
(-1.9)
P 		23
C 59.4
(3)
P 		53.2
(1.6)
P 		47.7
(0.3)
M 		33.4
(-3)
P 		26
avr 57
(3) 		42.5
(-0.1) 		38.7
(-0.9) 		28.8
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 61
1 2 3 4 5 6 range
A 29
(-2.8)
P 		72
(3)
P 		27.7
(-3)
P 		44.2
(-0.8)
P 		38.5
(-1.5)
P 		62.6
(1.7)
P 		44
B 48.9
(-0.8)
P 		42.2
(-1.6)
P 		34.7
(-2.4)
P 		28.7
(-3)
P 		49.3
(-0.8)
P 		85
(3)
P 		56
C 63.2
(1.3)
P 		40.5
(-1.2)
P 		46.8
(-0.5)
P 		24.1
(-3)
P 		63.2
(1.3)
P 		78.1
(3)
P 		54
avr 47
(-0.9) 		51.6
(-0.3) 		36.4
(-2.4) 		32.3
(-3) 		50.3
(-0.5) 		75.2
(3) 		43
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177301_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19289
Sequence Type Exemplar sequence
Representative Public ID Y37E11AM.D NCBI
Target Description Y37E11AM.D /REP_DB=WormBase Gene ID /WP=CE21548 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59459.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_068004(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_068004 NCBI Caenorhabditis elegans Y37E11AM.1 (Y37E11AM.1) mRNA, complete cds. 11/11 A 
SNAP00000039235 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3726432:3735440:1 11/11 None
GENEFINDER00000039241 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3729055:3735440:1 11/11 None
Y37E11AM.1 ENSEMBL cdna:known chromosome:CEL140:IV:3726415:3735471:1 gene:Y37E11AM.1 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3732468-3735446(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AM.1
Entrez Gene 177135 Entrez gene
SwissProt Q9N437 EMBL-EBI
WormBase CE33853 Wormbase
Functional Annotations
Ortholog
ID Title Organism
CANINE:1603585_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
CANINE:1603150_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
CANINE_2:CFA.13173.1.A1_S_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
CANINE_2:CFA.8510.1.A1_S_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
CANINE_2:CFAAFFX.7175.1.S1_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
CANINE_2:CFAAFFX.7177.1.S1_S_AT similar to DEAH (Asp-Glu-Ala-His) box polypeptide 34 isoform 1 cfa
DROSOPHILA_2:1628037_AT dm
DROSGENOME1:154576_AT dm
DROSGENOME1:145367_AT dm
HG-U133_PLUS_2:204815_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A_2:204815_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A:204815_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBA:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBB:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBC:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBD:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HUGENEFL:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HC-G110:HUM_ALU_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBB:RC_AA039439_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HU35KSUBD:RC_R48810_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HUGENEFL:D50924_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A:204816_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133_PLUS_2:204816_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A_2:204816_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
U133_X3P:HS.151706.1.A1_3P_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
U133_X3P:HS.151706.0.A1_3P_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
U133_X3P:204816_3P_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A_2:214017_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133_PLUS_2:214017_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U133A:214017_S_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U95AV2:31857_R_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U95D:81217_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
HG-U95D:89539_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 hs
MOUSE430_2:1431561_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 mm
MOE430B:1431561_A_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 mm
MG-U74CV2:166218_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 mm
MG-U74CV2:133953_AT DEAH (Asp-Glu-Ala-His) box polypeptide 34 (Dhx34), mRNA mm
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
3676 nucleic acid binding inferred from electronic annotation QuickGO AmiGO
4386 helicase activity inferred from electronic annotation QuickGO AmiGO
5524 ATP binding inferred from electronic annotation QuickGO AmiGO
8026 ATP-dependent helicase activity inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF59456 Hypothetical protein Y37E11AM.1 [Caenorhabditis elegans] ref|NP_500405.2| Y37E11AM.1 [Caenorhabditis elegans] 0.0
blast CAE63756 Hypothetical protein CBG08291 [Caenorhabditis briggsae] 0.0
blast BAB23515.1 unnamed protein product [Mus musculus] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR007502 EMBL-EBI Helicase-associated region 1.1E-27
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 7.7E-18
Pfam IPR007502 EMBL-EBI Helicase-associated region 1.1E-27
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 7.7E-18
Pfam IPR007502 EMBL-EBI Helicase-associated region 1.1E-27
Pfam IPR001650 EMBL-EBI Helicase, C-terminal 7.7E-18
Sequence
Target Sequence 
>C. ELEGANS:177301_S_AT
gataaggaggaagacgtcgacgaccttgtccaacgattcgagcgggatcaggagccagtt
cacagtgctcgagaagaagaactagaggatcaaaaagtgctcgacgagctccgcgcagat
gtaatgtgccctccaactcgagatatgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATAAGGAGGAAGACGTCGACGACC 158 351 907 Antisense
GGAAGACGTCGACGACCTTGTCCAA 274 529 915 Antisense
TCGACGACCTTGTCCAACGATTCGA 236 601 923 Antisense
ACCTTGTCCAACGATTCGAGCGGGA 445 79 929 Antisense
GATTCGAGCGGGATCAGGAGCCAGT 436 433 941 Antisense
GGGATCAGGAGCCAGTTCACAGTGC 680 495 950 Antisense
CAGGAGCCAGTTCACAGTGCTCGAG 211 209 955 Antisense
AGCCAGTTCACAGTGCTCGAGAAGA 131 83 959 Antisense
CGAGCTCCGCGCAGATGTAATGTGC 95 249 1011 Antisense
CTCCGCGCAGATGTAATGTGCCCTC 177 235 1015 Antisense
TGTGCCCTCCAACTCGAGATATGAT 338 557 1031 Antisense
Sequence Source Affymetrix Proprietary Database