[Home] | [Total List]

[177299_at]

Description M199.1 /REP_DB=WormBase Gene ID /WP=CE20018 /TR=Q9NAN9 /GB=CAB70255.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Cluster 6grp_total > 31      4grp_total > 21      6grp_cgc > 72      6grp_cgc_sub > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 85
1 2 3 4 range
A 41.2
(1.4)
A 		3.3
(-3)
A 		7
(-2.6)
A 		55
(3)
A 		52
B 53.2
(3)
A 		51
(2.7)
A 		4.5
(-3)
A 		24.2
(-0.6)
A 		49
C 47.4
(0.3)
A 		3.5
(-2.9)
A 		1.5
(-3)
A 		86.2
(3)
P 		85
avr 47.3
(2.1) 		19.3
(-1.2) 		4.3
(-3) 		55.1
(3) 		51

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 12.6
(-1.5)
A 		4.2
(-3)
A 		38.8
(3)
A 		11.7
(-1.7)
A 		17.2
(-0.7)
A 		5.3
(-2.8)
A 		35
B 29.2
(3)
A 		18
(0.4)
A 		8.3
(-1.9)
A 		6.2
(-2.4)
A 		3.7
(-3)
A 		9.9
(-1.5)
A 		26
C 4.4
(-2.7)
A 		45.8
(3)
A 		23.9
(-0)
A 		30.2
(0.8)
A 		2.5
(-3)
A 		6.6
(-2.4)
A 		43
avr 15.4
(-0) 		22.7
(2.6) 		23.7
(3) 		16
(0.2) 		7.8
(-2.8) 		7.3
(-3) 		16
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 17
1 2 3 4 range
A 15
(3)
A 		0.7
(-3)
A 		1.8
(-2.5)
A 		8
(0.1)
A 		14
B 17
(3)
A 		12.6
(1.4)
A 		1
(-3)
A 		5.2
(-1.4)
A 		16
C 15.7
(3)
A 		1
(-2.8)
A 		0.5
(-3)
A 		14.5
(2.5)
P 		15
avr 15.9
(3) 		4.8
(-1.5) 		1.1
(-3) 		9.2
(0.3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 13
1 2 3 4 5 6 range
A 2.3
(-2.2)
A 		1.5
(-2.8)
A 		8.5
(3)
A 		3
(-1.6)
A 		5.2
(0.3)
A 		1.3
(-3)
A 		7
B 10.2
(3)
A 		6
(0.1)
A 		2
(-2.7)
A 		1.6
(-2.9)
A 		1.5
(-3)
A 		3.7
(-1.5)
A 		9
C 1.6
(-2.6)
A 		14
(3)
A 		6.1
(-0.6)
A 		6.1
(-0.6)
A 		0.8
(-3)
A 		2.2
(-2.4)
A 		13
avr 4.7
(-0.1) 		7.2
(3) 		5.5
(0.9) 		3.6
(-1.5) 		2.5
(-2.9) 		2.4
(-3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177299_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.10143
Sequence Type Exemplar sequence
Representative Public ID M199.1 NCBI
Target Description M199.1 /REP_DB=WormBase Gene ID /WP=CE20018 /TR=Q9NAN9 /GB=CAB70255.1 /SUBMIT=HINXTON /CHR=4 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070422(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070422 NCBI Caenorhabditis elegans Serpentine Receptor, class T family member (srt-44) (srt-44) mRNA, complete cds. 11/11 None
M199.1 ENSEMBL cdna:known chromosome:CEL140:IV:15103591:15106445:1 gene:M199.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027563 5/11 Cross Hyb Matching Probes None
GENEFINDER00000027583 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:15103596-15106451(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Gene Symbol srt-44
Ensembl M199.1
Entrez Gene 187500 Entrez gene
SwissProt Q9NAN9 EMBL-EBI
WormBase CE20018 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB70255 Hypothetical protein M199.1 [Caenorhabditis elegans] ref|NP_502823.1| Serpentine Receptor, class T family member (srt-44) [Caenorhabditis elegans] 1.0E-175
blast CAE68185 Hypothetical protein CBG13845 [Caenorhabditis briggsae] 1.0E-151
blast CAE68183 Hypothetical protein CBG13843 [Caenorhabditis briggsae] 1.0E-144
Protein Domains
Database ID Description E-Value
Pfam IPR002651 EMBL-EBI Protein of unknown function DUF32 6.1E-98
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_502823.1 7 37-59,71-93,108-130,151-173,208-225,237-259,269-291
M199.1 7 37-59,71-93,108-130,151-173,208-225,237-259,269-291
Sequence
Target Sequence 
>C. ELEGANS:177299_AT
gcatgtgcaattacagtttccctgtttttgaatcgaattgttagcattggattgagagag
tatgcggataaaattgaaaagcctatggcctacatttcaatggttttctgtgtaatttac
atgttctacattagttttttcaccactcccgcatgtttcaactcattgattatggcatgg
ccatctgatccattgtcagaaaaggagccaagtgaagaggcaactaattattatcgaaat
gcgtctcaagcctggaataactggattttcatcacttgtatggttgttctattcactttg
tattacgcattggttaagaaattggcaagaggacagagttcgaaagcttcaagagcgatt
ttcattcaatgctgtatcatatgcttcttcaactcgtgcactgcaattttctacaattct
ctggcattcataactccttctccagcaattctagtttttggtcaattgtgttggtctatt
aatcatggatgtcctgctcttatctacgtcacaatgaatgaaacgatccggcgggaattc
aaaaaattgattttccgagttgcaacgagcaaagtggaagaggggacctccagtgctaat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GCATGTGCAATTACAGTTTCCCTGT 230 311 373 Antisense
AAGCCTATGGCCTACATTTCAATGG 555 147 451 Antisense
CTCCCGCATGTTTCAACTCATTGAT 472 233 518 Antisense
ATGGCATGGCCATCTGATCCATTGT 441 51 544 Antisense
AAATGCGTCTCAAGCCTGGAATAAC 167 119 609 Antisense
TTCTTCAACTCGTGCACTGCAATTT 505 687 757 Antisense
AATTCTCTGGCATTCATAACTCCTT 285 177 787 Antisense
CTCCTTCTCCAGCAATTCTAGTTTT 597 235 806 Antisense
TAATCATGGATGTCCTGCTCTTATC 233 635 852 Antisense
CTGCTCTTATCTACGTCACAATGAA 674 237 866 Antisense
GGAAGAGGGGACCTCCAGTGCTAAT 247 531 948 Antisense
Sequence Source Affymetrix Proprietary Database