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[177298_at]

Description M163.1 /REP_DB=WormBase Gene ID /WP=CE12446 /TR=Q93906 /GB=CAB01897.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 71      6grp_high1_10_10 > 29      4grp_highest_8_8 > 47      4grp_high_8_8 > 11      6grp_highest_nonorm > 70      6grp_total > 27      4grp_total > 13      6grp_highest_sub > De      6grp_high1_sub > Cu      6grp_total_sub > Decrease      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 988
1 2 3 4 range
A 692.2
(1.6)
P 		255.3
(-2.1)
P 		148.6
(-3)
P 		857
(3)
P 		708
B 651
(0.1)
P 		234.7
(-2.5)
P 		144.7
(-3)
P 		1132.9
(3)
P 		988
C 673.7
(0.4)
P 		202.2
(-2.8)
P 		171.1
(-3)
P 		1054.6
(3)
P 		884
avr 672.3
(0.6) 		230.7
(-2.5) 		154.8
(-3) 		1014.8
(3) 		860

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 280
1 2 3 4 5 6 range
A 451.8
(3)
P 		370.7
(1)
P 		285.8
(-1)
P 		203.2
(-3)
P 		294.8
(-0.8)
P 		308.5
(-0.5)
P 		249
B 472.3
(3)
P 		404.2
(1.4)
P 		305.6
(-1)
P 		222.8
(-3)
P 		303.9
(-1)
P 		287.7
(-1.4)
P 		250
C 483.3
(3)
P 		399.3
(1.1)
P 		218
(-3)
P 		271
(-1.8)
P 		292.2
(-1.3)
P 		320.3
(-0.7)
P 		265
avr 469.1
(3) 		391.4
(1) 		269.8
(-2) 		232.3
(-3) 		297
(-1.4) 		305.5
(-1.1) 		237
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 219
1 2 3 4 range
A 252
(3)
P 		55.4
(-2.5)
P 		38.9
(-3)
P 		125.4
(-0.6)
P 		213
B 207.6
(2)
P 		58
(-2.3)
P 		33.5
(-3)
P 		241.4
(3)
P 		208
C 223
(3)
P 		58.1
(-3)
P 		59.6
(-2.9)
P 		177.8
(1.4)
P 		165
avr 227.5
(3) 		57.2
(-2.6) 		44
(-3) 		181.5
(1.5) 		184

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 83.3
(-0.6)
P 		131.8
(3)
P 		62.2
(-2.2)
P 		51.5
(-3)
P 		88.9
(-0.2)
P 		75.1
(-1.2)
P 		80
B 164.3
(3)
P 		134.5
(1.3)
P 		74.2
(-2.1)
P 		59
(-3)
P 		123.5
(0.7)
P 		107.3
(-0.2)
P 		105
C 179.1
(3)
P 		121.8
(0.2)
P 		55.5
(-3)
P 		54.5
(-3)
P 		94.6
(-1.1)
P 		107.2
(-0.5)
P 		125
avr 142.2
(3) 		129.4
(2.1) 		64
(-2.4) 		55
(-3) 		102.3
(0.3) 		96.5
(-0.1) 		87
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177298_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17789
Sequence Type Exemplar sequence
Representative Public ID M163.1 NCBI
Target Description M163.1 /REP_DB=WormBase Gene ID /WP=CE12446 /TR=Q93906 /GB=CAB01897.1 /SUBMIT=HINXTON /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078011(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078011 NCBI Caenorhabditis elegans M163.1 (M163.1) mRNA, complete cds. 11/11 None
GENEFINDER00000011173 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:14502878:14503779:-1 11/11 None
SNAP00000011163 ENSEMBL cdna:SNAP chromosome:CEL140:X:14503294:14503743:-1 11/11 None
M163.1 ENSEMBL cdna:known chromosome:CEL140:X:14502417:14503743:-1 gene:M163.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:14503293-14503743(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M163.1
Entrez Gene 181546 Entrez gene
SwissProt Q93906 EMBL-EBI
WormBase CE12446 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB01897 Hypothetical protein M163.1 [Caenorhabditis elegans] ref|NP_510412.1| M163.1 [Caenorhabditis elegans] 7.0E-71
blast CAB01897 Hypothetical protein M163.1 [Caenorhabditis elegans] ref|NP_510412.1| M163.1 [Caenorhabditis elegans] 5.0E-67
blast CAE63162 Hypothetical protein CBG07479 [Caenorhabditis briggsae] 5.0E-20
blast CAE63162 Hypothetical protein CBG07479 [Caenorhabditis briggsae] 2.0E-17
Sequence
Target Sequence 
>C. ELEGANS:177298_AT
cttcttcgcgaatgcagtcagctccgatcaacattgcatacagtaatcgcgacgatcaac
aagtctggagagacaactactaccggtggaatcatcagcaacagtttcagtttgatgatg
atcaagatgaagacgttcagcagaaccatcattccgaaaatgcagaggatcagttcatca
tgatgcaaaacggtttctcaggaggtgtcatcgaggagatcgaacagacaagcgaaaacg
acaatcagccagatgagaatgacgtcaacgaacaaatcggaaacaatgacgaggcgataa
cacagcaaaaaattgccgagatgaatgatgacctctttgaacagctgctggcggagaacg
agcgcaagttacggcaactg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CTTCTTCGCGAATGCAGTCAGCTCC 600 221 44 Antisense
GCTCCGATCAACATTGCATACAGTA 373 299 64 Antisense
ATCGCGACGATCAACAAGTCTGGAG 464 37 89 Antisense
GGAGAGACAACTACTACCGGTGGAA 15 515 110 Antisense
CCGGTGGAATCATCAGCAACAGTTT 288 265 126 Antisense
CGTTCAGCAGAACCATCATTCCGAA 618 247 177 Antisense
ACGGTTTCTCAGGAGGTGTCATCGA 424 95 233 Antisense
AGCGAAAACGACAATCAGCCAGATG 458 81 274 Antisense
TGATGACCTCTTTGAACAGCTGCTG 262 567 369 Antisense
ACAGCTGCTGGCGGAGAACGAGCGC 215 109 384 Antisense
GAACGAGCGCAAGTTACGGCAACTG 290 347 399 Antisense
Sequence Source Affymetrix Proprietary Database