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[177296_at]

Description BE10.4 /REP_DB=WormBase Gene ID /WP=CE15567 /TR=O17553 /GB=CAB07546.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 01      4grp_total > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 6.7
(-2.9)
A 		21.2
(-2)
A 		4.8
(-3)
A 		102.4
(3)
A 		98
B 11
(-3)
A 		19
(-1.2)
A 		37.5
(2.8)
A 		38.3
(3)
A 		27
C 67.7
(3)
A 		37.2
(-3)
A 		39.4
(-2.6)
A 		39.9
(-2.5)
A 		31
avr 28.5
(-2.5) 		25.8
(-3) 		27.2
(-2.8) 		60.2
(3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 53
1 2 3 4 5 6 range
A 19.2
(-3)
A 		36.7
(3)
A 		24.3
(-1.3)
A 		23.2
(-1.6)
A 		32
(1.4)
A 		29.5
(0.5)
A 		18
B 7.7
(-3)
A 		58.6
(3)
A 		16.4
(-2)
A 		20.9
(-1.4)
A 		31.6
(-0.2)
A 		31.1
(-0.2)
A 		51
C 60.9
(3)
A 		40.3
(-0.5)
A 		27.3
(-2.8)
A 		32.6
(-1.9)
A 		25.9
(-3)
A 		41.2
(-0.4)
P 		35
avr 29.3
(-1.2) 		45.2
(3) 		22.7
(-3) 		25.6
(-2.2) 		29.8
(-1.1) 		33.9
(-0) 		23
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 21
1 2 3 4 range
A 2.4
(-2.5)
A 		4.6
(-1.6)
A 		1.3
(-3)
A 		15
(3)
A 		14
B 3.5
(-3)
A 		4.7
(-1.6)
A 		8.7
(3)
A 		8.2
(2.4)
A 		5
C 22.4
(3)
A 		10.7
(-1.5)
A 		13.7
(-0.3)
A 		6.7
(-3)
A 		16
avr 9.4
(1.9) 		6.7
(-3) 		7.9
(-0.8) 		10
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 20
1 2 3 4 5 6 range
A 3.5
(-3)
A 		13
(3)
A 		5.3
(-1.9)
A 		5.9
(-1.5)
A 		9.7
(0.9)
A 		7.2
(-0.7)
A 		10
B 2.7
(-3)
A 		19.5
(3)
A 		4
(-2.5)
A 		5.5
(-2)
A 		12.8
(0.6)
A 		11.6
(0.2)
A 		17
C 22.6
(3)
A 		12.3
(-0.9)
A 		6.9
(-2.9)
A 		6.6
(-3)
A 		8.4
(-2.3)
A 		13.8
(-0.3)
P 		16
avr 9.6
(-0.3) 		14.9
(3) 		5.4
(-3) 		6
(-2.6) 		10.3
(0.1) 		10.9
(0.5) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177296_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7287
Sequence Type Exemplar sequence
Representative Public ID BE10.4 NCBI
Target Description BE10.4 /REP_DB=WormBase Gene ID /WP=CE15567 /TR=O17553 /GB=CAB07546.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067265(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067265 NCBI Caenorhabditis elegans BE10.4 (BE10.4) mRNA, complete cds. 11/11 None
SNAP00000027557 ENSEMBL cdna:SNAP chromosome:CEL140:III:12807964:12816583:1 11/11 None
BE10.4 ENSEMBL cdna:known chromosome:CEL140:III:12813414:12816671:1 gene:BE10.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027562 8/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12813464-12816579(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl BE10.4
Entrez Gene 176696 Entrez gene
SwissProt O17553 EMBL-EBI
WormBase CE15567 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07545 Hypothetical protein BE10.3 [Caenorhabditis elegans] ref|NP_499665.1| BE10.3 [Caenorhabditis elegans] 0.0
blast CAB07546 Hypothetical protein BE10.4 [Caenorhabditis elegans] ref|NP_499666.1| BE10.4 [Caenorhabditis elegans] 1.0E-132
blast CAB07546 Hypothetical protein BE10.4 [Caenorhabditis elegans] ref|NP_499666.1| BE10.4 [Caenorhabditis elegans] 1.0E-131
blast CAE69534 Hypothetical protein CBG15743 [Caenorhabditis briggsae] 3.0E-76
blast CAE69534 Hypothetical protein CBG15743 [Caenorhabditis briggsae] 1.0E-75
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177296_AT
caaaatcactacgaatctccgccaagcctgtcgtcagcttctgcagcttcatgtctctca
agaatccggctggccgccacgtttgatccgataatttcagcgaaaatcaatcgatttatt
gattcgatgagaatcgatcggttgagggcttacgtttgtgaacggacggcctatttttgc
gatgaagtgcaacaaaaagaggtcggcgacttgtttcatcaatacgatcgatcgatagaa
ataatcgataaagtacgtcacgagttgacgagtacggagaaagatcaactaaatatgatg
gagaacttgaatgacacgttggccgagcagacattcttcgtttacaagtttcatcaacta
aacccagtcgacctggcggttctaacatctgcgaaagcttctctcaccactgctctttct
gcaacagacccggatgcttcattgagcaaagcgatgggctcatttagccctcaggatttg
gaaagaatggctgctcttccagtctcccaacttcccgaagaggttcgaagtcacttggca
cgttgccagataactgctccagaagtcgtacacgataccgtggcgtttttgttgtcagt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATCACTACGAATCTCCGCCAA 9 191 289 Antisense
TCATGTCTCTCAAGAATCCGGCTGG 75 621 337 Antisense
GTGAACGGACGGCCTATTTTTGCGA 329 481 446 Antisense
GGTCGGCGACTTGTTTCATCAATAC 90 503 489 Antisense
GGCCGAGCAGACATTCTTCGTTTAC 485 543 609 Antisense
TAAACCCAGTCGACCTGGCGGTTCT 117 639 647 Antisense
TAACATCTGCGAAAGCTTCTCTCAC 565 639 671 Antisense
CAACAGACCCGGATGCTTCATTGAG 628 189 710 Antisense
GTTCGAAGTCACTTGGCACGTTGCC 487 441 811 Antisense
CACGTTGCCAGATAACTGCTCCAGA 644 199 827 Antisense
ATACCGTGGCGTTTTTGTTGTCAGT 688 21 863 Antisense
Sequence Source Affymetrix Proprietary Database