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[177295_at]

Description Y37E11AL.H /REP_DB=WormBase Gene ID /WP=CE21555 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59451.1
Cluster 6grp_total > 64      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 41
1 2 3 4 range
A 15.1
(3)
A 		10
(0.3)
A 		7
(-1.3)
A 		3.9
(-3)
A 		11
B 29.1
(3)
A 		24.6
(2)
A 		1.4
(-3)
A 		20.1
(1.1)
A 		28
C 1.6
(-3)
A 		42.7
(3)
A 		14.4
(-1.1)
A 		26
(0.6)
A 		41
avr 15.3
(-0.5) 		25.8
(3) 		7.6
(-3) 		16.7
(-0) 		18

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 5.3
(-2.6)
A 		1.6
(-3)
A 		40.4
(1)
A 		1.4
(-3)
A 		8
(-2.3)
A 		59.2
(3)
A 		58
B 4.4
(-2.7)
A 		4.7
(-2.6)
A 		40.9
(3)
A 		2.2
(-3)
A 		6.7
(-2.3)
A 		13.2
(-1.3)
A 		39
C 10.3
(-2.8)
A 		10
(-2.8)
A 		9
(-3)
A 		42.3
(3)
P 		12.5
(-2.4)
A 		14.7
(-2)
A 		33
avr 6.7
(-2.7) 		5.4
(-3) 		30.1
(3) 		15.3
(-0.6) 		9.1
(-2.1) 		29
(2.7) 		25
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 12
1 2 3 4 range
A 5.5
(3)
A 		2.2
(-1)
A 		1.8
(-1.5)
A 		0.6
(-3)
A 		5
B 9.3
(3)
A 		6.1
(0.9)
A 		0.3
(-3)
A 		4.3
(-0.3)
A 		9
C 0.5
(-3)
A 		12.3
(3)
A 		5
(-0.7)
A 		4.4
(-1)
A 		12
avr 5.1
(0.6) 		6.9
(3) 		2.4
(-3) 		3.1
(-2.1) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 14
1 2 3 4 5 6 range
A 1
(-2.7)
A 		0.6
(-2.9)
A 		8.8
(0.6)
A 		0.4
(-3)
A 		2.4
(-2.1)
A 		14.4
(3)
A 		14
B 1.5
(-2.4)
A 		1.5
(-2.4)
A 		9.9
(3)
A 		0.6
(-3)
A 		2.7
(-1.6)
A 		4.9
(-0.2)
A 		9
C 3.8
(-1.5)
A 		3
(-2.3)
A 		2.3
(-3)
A 		8.5
(3)
P 		4
(-1.4)
A 		4.9
(-0.5)
A 		6
avr 2.1
(-2.6) 		1.7
(-3) 		7
(2) 		3.2
(-1.6) 		3
(-1.8) 		8.1
(3) 		6
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177295_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19180
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.H NCBI
Target Description Y37E11AL.H /REP_DB=WormBase Gene ID /WP=CE21555 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59451.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067993 NCBI Caenorhabditis elegans Y37E11AL.4 (Y37E11AL.4) mRNA, complete cds. 11/11 None
Y37E11AL.4 ENSEMBL cdna:known chromosome:CEL140:IV:3663631:3664405:1 gene:Y37E11AL.4 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3663636-3664411(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.4
Entrez Gene 189620 Entrez gene
SwissProt Q9N449 EMBL-EBI
WormBase CE21555 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59451 Hypothetical protein Y37E11AL.4 [Caenorhabditis elegans] ref|NP_500394.1| Y37E11AL.4 [Caenorhabditis elegans] 2.0E-53
blast AAB66148 Hypothetical protein K07E8.1 [Caenorhabditis elegans] ref|NP_493784.1| K07E8.1 [Caenorhabditis elegans] 1.0E-15
blast CAA21683 Hypothetical protein Y54E2A.9 [Caenorhabditis elegans] ref|NP_497065.1| Y54E2A.9 [Caenorhabditis elegans] 5.0E-15
Protein Domains
Database ID Description E-Value
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 4.6E-11
Pfam IPR005515 EMBL-EBI Vitelline membrane outer layer protein I (VOMI) 2.9E-21
Sequence
Target Sequence 
>C. ELEGANS:177295_AT
tgctgcgtacaattggcatcttcgcttcgctcctcttggcaacttgtgctgagcccacca
tcatcaagtcgccacgtgtcacaaattggggcgaatggaatggaatggaaacttgtccag
aacgtaatacagccaaaactattataaatgggaaatggaccggtgatcagttctgcccat
ctggacaagtcgtctgtggaatcaatactaaaactgaatcgcgtcagtggcttaaggatg
acactggcctcaacaac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGCTGCGTACAATTGGCATCTTCGC 710 581 14 Antisense
GCGTACAATTGGCATCTTCGCTTCG 708 291 18 Antisense
TCTTGGCAACTTGTGCTGAGCCCAC 445 617 47 Antisense
GTGTCACAAATTGGGGCGAATGGAA 16 485 89 Antisense
GGAAACTTGTCCAGAACGTAATACA 506 527 120 Antisense
GTCCAGAACGTAATACAGCCAAAAC 138 477 128 Antisense
AAATGGACCGGTGATCAGTTCTGCC 145 121 166 Antisense
TGGACAAGTCGTCTGTGGAATCAAT 343 535 195 Antisense
ATCAATACTAAAACTGAATCGCGTC 262 25 214 Antisense
GAATCGCGTCAGTGGCTTAAGGATG 278 329 229 Antisense
TAAGGATGACACTGGCCTCAACAAC 599 635 246 Antisense
Sequence Source Affymetrix Proprietary Database