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[177293_s_at]

Description Y37E11AL.J /REP_DB=WormBase Gene ID /WP=CE26064 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59453.1
Cluster 6grp_highest_10_10 > 88      6grp_high1_10_10 > 98      4grp_high_8_8 > 46      6grp_highest_nonorm > 92      6grp_total > 98      4grp_total > 41      6grp_highest_sub > Da      6grp_high1_sub > In      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L2      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 188
1 2 3 4 range
A 100.2
(-3)
P 		287
(3)
P 		212
(0.6)
P 		221.8
(0.9)
A 		187
B 99.2
(-3)
P 		212.7
(3)
P 		203.6
(2.5)
P 		172.6
(0.9)
P 		114
C 103.8
(-3)
P 		218.2
(1.4)
P 		258.7
(3)
P 		141
(-1.6)
P 		155
avr 101.1
(-3) 		239.3
(3) 		224.8
(2.4) 		178.5
(0.4) 		138

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 405
1 2 3 4 5 6 range
A 115.4
(-2.9)
P 		122.5
(-2.7)
P 		108.1
(-3)
P 		170.4
(-1.9)
P 		266.3
(-0.2)
P 		445.3
(3)
P 		337
B 125.5
(-2.5)
P 		93
(-3)
P 		104.6
(-2.8)
P 		187
(-1.6)
P 		373
(1.2)
P 		497.8
(3)
P 		405
C 168.2
(-1.8)
P 		99.4
(-3)
P 		154.6
(-2)
P 		168.3
(-1.8)
P 		415.7
(2.7)
P 		431.7
(3)
P 		332
avr 136.4
(-2.5) 		105
(-3) 		122.4
(-2.7) 		175.2
(-1.8) 		351.7
(1.2) 		458.3
(3) 		353
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 66
1 2 3 4 range
A 36.5
(-2.2)
P 		62.3
(3)
P 		55.4
(1.6)
P 		32.5
(-3)
A 		30
B 31.6
(-3)
P 		52.5
(3)
P 		47.2
(1.5)
P 		36.8
(-1.5)
P 		21
C 34.4
(-2)
P 		62.7
(0.5)
P 		90.2
(3)
P 		23.8
(-3)
P 		66
avr 34.2
(-2.4) 		59.2
(2.1) 		64.3
(3) 		31
(-3) 		33

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 164
1 2 3 4 5 6 range
A 21.3
(-3)
P 		43.6
(-1.5)
P 		23.5
(-2.8)
P 		43.2
(-1.5)
P 		80.3
(1.1)
P 		108.4
(3)
P 		87
B 43.7
(-2.3)
P 		31
(-2.8)
P 		25.4
(-3)
P 		49.5
(-2.1)
P 		151.5
(1.7)
P 		185.6
(3)
P 		160
C 62.4
(-1.3)
P 		30.3
(-3)
P 		39.3
(-2.5)
P 		33.9
(-2.8)
P 		134.5
(2.5)
P 		144.5
(3)
P 		114
avr 42.5
(-2.3) 		35
(-2.7) 		29.4
(-3) 		42.2
(-2.3) 		122.1
(1.8) 		146.2
(3) 		117
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177293_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19158
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.J NCBI
Target Description Y37E11AL.J /REP_DB=WormBase Gene ID /WP=CE26064 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59453.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001028265(10), NM_001028266(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001028265 NCBI Caenorhabditis elegans Y37E11AL.3a (Y37E11AL.3) mRNA, complete cds. 10/11 None
NM_001028266 NCBI Caenorhabditis elegans Y37E11AL.3b (Y37E11AL.3) mRNA, complete cds. 10/11 None
SNAP00000035934 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3682791:3698262:1 10/11 None
GENEFINDER00000035940 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3694938:3698262:1 11/11 None
Y37E11AL.3a ENSEMBL cdna:known chromosome:CEL140:IV:3694930:3698429:1 gene:Y37E11AL.3 10/11 None
Y37E11AL.3b ENSEMBL cdna:known chromosome:CEL140:IV:3695788:3698355:1 gene:Y37E11AL.3 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3694943-3698268(+) 100.0 100.0
Public Domain and Genome References
Ensembl Y37E11AL.3
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59453 Hypothetical protein Y37E11AL.3a [Caenorhabditis elegans] ref|NP_001023436.1| Y37E11AL.3a [Caenorhabditis elegans] 1.0E-148
blast AAF59453 Hypothetical protein Y37E11AL.3a [Caenorhabditis elegans] ref|NP_001023436.1| Y37E11AL.3a [Caenorhabditis elegans] 1.0E-143
blast CAE63764 Hypothetical protein CBG08300 [Caenorhabditis briggsae] 1.0E-110
blast CAE63764 Hypothetical protein CBG08300 [Caenorhabditis briggsae] 1.0E-105
blast AAP13760 Hypothetical protein Y37E11AL.3b [Caenorhabditis elegans] ref|NP_001023437.1| Y37E11AL.3b [Caenorhabditis elegans] 1.0E-92
Sequence
Target Sequence 
>C. ELEGANS:177293_S_AT
aattgcacgacgagtgtggtatcaatgagaaagatatcctctaccagggtcttgattatc
atggaactgagtctcgtgtcagcaaggagctcagagattcccgccaagcatcaatcatcg
aatcgtgcgtcgacttccaaaagcaaattcaatggaaaatcggaattatggagaaagtta
aggcgaaatccgggagatcatatccaatgtcagatgggccaagtgtacgtacacgtggtg
gacaggataagcaacgagaggagatgaaaaaacagcagaaagagctcgaaaagagcaaga
aacagaggaaaactagagctgcaggagagcaggatccattcaagacaccacagaaaaaga
ttgaattcaatgcgttggatgagcgaagattggaaactgcccggaatcgcgaaaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AATTGCACGACGAGTGTGGTATCAA 253 177 407 Antisense
GATATCCTCTACCAGGGTCTTGATT 565 425 439 Antisense
TTATCATGGAACTGAGTCTCGTGTC 156 681 462 Antisense
GAGTCTCGTGTCAGCAAGGAGCTCA 225 401 475 Antisense
TCCCGCCAAGCATCAATCATCGAAT 223 597 505 Antisense
CGAATCGTGCGTCGACTTCCAAAAG 136 253 525 Antisense
GGCGAAATCCGGGAGATCATATCCA 343 541 588 Antisense
TCAGATGGGCCAAGTGTACGTACAC 8 623 616 Antisense
GTACACGTGGTGGACAGGATAAGCA 635 459 635 Antisense
GCAGGAGAGCAGGATCCATTCAAGA 496 311 727 Antisense
TGGAAACTGCCCGGAATCGCGAAAA 555 547 797 Antisense
Sequence Source Affymetrix Proprietary Database