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[177290_at]

Description ZK20.1 /REP_DB=WormBase Gene ID /WP=CE06605 /TR=Q23448 /GB=CAA93777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 90      6grp_high1_10_10 > 90      4grp_highest_8_8 > 44      4grp_high_8_8 > 16      6grp_highest_nonorm > 72      6grp_total > 93      4grp_total > 31      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 675
1 2 3 4 range
A 1102.9
(3)
P 		428
(-3)
P 		504.3
(-2.3)
P 		660.8
(-0.9)
P 		675
B 1100.6
(3)
P 		433
(-3)
P 		539.9
(-2)
P 		806.6
(0.4)
P 		668
C 952.7
(3)
P 		430.1
(-3)
P 		540.4
(-1.7)
P 		610.6
(-0.9)
P 		523
avr 1052.1
(3) 		430.4
(-3) 		528.2
(-2.1) 		692.7
(-0.5) 		622

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 354
1 2 3 4 5 6 range
A 378.6
(-1.4)
P 		467.6
(2.1)
P 		338.9
(-3)
P 		345
(-2.8)
P 		490.7
(3)
P 		398.6
(-0.6)
P 		152
B 478.9
(0.2)
P 		552.9
(2.5)
P 		416.9
(-1.8)
P 		377.6
(-3)
P 		569.3
(3)
P 		399
(-2.3)
P 		192
C 385.3
(-1.7)
P 		443.4
(-0.7)
P 		318.8
(-2.8)
P 		337.7
(-2.5)
P 		662.6
(3)
P 		308.6
(-3)
P 		354
avr 414.3
(-1.3) 		488
(0.7) 		358.2
(-2.9) 		353.4
(-3) 		574.2
(3) 		368.7
(-2.6) 		221
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 309
1 2 3 4 range
A 401.6
(3)
P 		92.9
(-3)
P 		131.8
(-2.2)
P 		96.7
(-2.9)
P 		309
B 351
(3)
P 		106.9
(-3)
P 		125.1
(-2.6)
P 		171.9
(-1.4)
P 		244
C 315.4
(3)
P 		123.7
(-2.4)
P 		188.3
(-0.6)
P 		103
(-3)
P 		212
avr 356
(3) 		107.8
(-3) 		148.4
(-2) 		123.9
(-2.6) 		248

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 163
1 2 3 4 5 6 range
A 69.8
(-3)
P 		166.3
(3)
P 		73.8
(-2.8)
P 		87.5
(-1.9)
P 		148.1
(1.9)
P 		97.1
(-1.3)
P 		97
B 166.6
(0)
P 		184
(0.8)
P 		101.2
(-2.9)
P 		100
(-3)
P 		231.3
(3)
P 		148.8
(-0.8)
P 		131
C 142.8
(0.1)
P 		135.3
(-0.2)
P 		81.1
(-2.5)
P 		67.9
(-3)
P 		214.4
(3)
P 		103.3
(-1.6)
P 		147
avr 126.4
(-0.8) 		161.9
(1.1) 		85.4
(-3) 		85.1
(-3) 		197.9
(3) 		116.4
(-1.3) 		113
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177290_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2715
Sequence Type Exemplar sequence
Representative Public ID ZK20.1 NCBI
Target Description ZK20.1 /REP_DB=WormBase Gene ID /WP=CE06605 /TR=Q23448 /GB=CAA93777.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_064085(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_064085 NCBI Caenorhabditis elegans ZK20.1 (ZK20.1) mRNA, complete cds. 11/11 None
SNAP00000019228 ENSEMBL cdna:SNAP chromosome:CEL140:II:11646747:11648893:1 11/11 None
GENEFINDER00000019235 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:11646747:11648893:1 11/11 None
ZK20.1 ENSEMBL cdna:known chromosome:CEL140:II:11646652:11649014:1 gene:ZK20.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:11646743-11648890(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK20.1
Entrez Gene 191210 Entrez gene
SwissProt Q23448 EMBL-EBI
WormBase CE06605 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA93777 Hypothetical protein ZK20.1 [Caenorhabditis elegans] ref|NP_496486.1| ZK20.1 [Caenorhabditis elegans] 0.0
blast CAE59461 Hypothetical protein CBG02841 [Caenorhabditis briggsae] 0.0
Sequence
Target Sequence 
>C. ELEGANS:177290_AT
gacactgcaatccacgtggatgtcactgaaagcgtagttaacgcagagctctcaaagttg
tactctagcgccaatacacgattcatttggaatgatgtccctgaaattaaagaacttctg
aaatcctgtaaaactactgaatgcagatttattgaagatggtgatattgtctcctcattc
ttcgatcgtccatccatcagaattcaatcggataacaccgtttctctgcgtctcccactc
tcaacctctctcacaactaccaatggaaaagagttgttccgaattcaaactgaagttgag
ctgaatctagaagatattgtcctcgaacatccagaaaatggagaagtcttctggagtgct
aaattccatatcaagaatatcagaattctacaaacttccagctcaagaaacttccagaag
ttcgcaacaagaatggagtcttggattgaagagcacaagcttttcatggagaacctcctg
aacacctacattcaagg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GACACTGCAATCCACGTGGATGTCA 476 367 646 Antisense
GCTCTCAAAGTTGTACTCTAGCGCC 709 299 693 Antisense
CTCTAGCGCCAATACACGATTCATT 173 231 708 Antisense
GATGGTGATATTGTCTCCTCATTCT 191 409 802 Antisense
TTCGATCGTCCATCCATCAGAATTC 29 697 826 Antisense
ATCGGATAACACCGTTTCTCTGCGT 385 35 852 Antisense
GATATTGTCCTCGAACATCCAGAAA 486 427 958 Antisense
GAGAAGTCTTCTGGAGTGCTAAATT 633 391 986 Antisense
GAATTCTACAAACTTCCAGCTCAAG 123 325 1028 Antisense
ACAAGCTTTTCATGGAGAACCTCCT 264 107 1100 Antisense
ACCTCCTGAACACCTACATTCAAGG 111 87 1118 Antisense
Sequence Source Affymetrix Proprietary Database