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[177289_at]

Description Y37E11AL.I /REP_DB=WormBase Gene ID /WP=CE21556 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59452.1
Cluster 6grp_total > 80      4grp_total > 45      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L1      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 31
1 2 3 4 range
A 15.5
(0.9)
A 		20.9
(3)
A 		10.4
(-1.1)
A 		5.5
(-3)
A 		15
B 36.1
(3)
A 		10.4
(-2.3)
A 		7
(-3)
A 		7.4
(-2.9)
A 		29
C 33.3
(3)
A 		22.4
(0.6)
A 		7
(-2.8)
A 		6.3
(-3)
A 		27
avr 28.3
(3) 		17.9
(0.2) 		8.1
(-2.5) 		6.4
(-3) 		22

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 43
1 2 3 4 5 6 range
A 4.3
(-1.7)
A 		10.8
(2.8)
A 		2.4
(-3)
A 		10.9
(2.9)
A 		9.7
(2)
A 		11.1
(3)
A 		9
B 11
(-2)
A 		9.1
(-2.3)
A 		6.5
(-2.7)
A 		45.6
(3)
A 		8.6
(-2.4)
A 		4.3
(-3)
A 		41
C 2.9
(-3)
A 		3.8
(-2.7)
A 		7.1
(-1.8)
A 		23.6
(3)
A 		8.7
(-1.3)
A 		3
(-3)
A 		21
avr 6.1
(-2.8) 		7.9
(-2.3) 		5.3
(-3) 		26.7
(3) 		9
(-2) 		6.1
(-2.8) 		21
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 11
1 2 3 4 range
A 5.7
(3)
A 		4.5
(1.5)
A 		2.7
(-0.7)
A 		0.8
(-3)
A 		5
B 11.5
(3)
A 		2.6
(-2.4)
A 		1.6
(-3)
A 		1.6
(-3)
A 		10
C 11
(3)
A 		6.4
(0.2)
A 		2.4
(-2.2)
A 		1.1
(-3)
A 		10
avr 9.4
(3) 		4.5
(-0.6) 		2.2
(-2.3) 		1.2
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 12
1 2 3 4 5 6 range
A 0.8
(-2.5)
A 		3.8
(3)
A 		0.5
(-3)
A 		2.8
(1.2)
A 		2.9
(1.4)
A 		2.7
(1)
A 		3
B 3.8
(-1.7)
A 		3
(-2.2)
A 		1.6
(-3)
A 		12.1
(3)
A 		3.5
(-1.9)
A 		1.6
(-3)
A 		11
C 1.1
(-2.8)
A 		1.2
(-2.7)
A 		1.8
(-1.7)
A 		4.8
(3)
A 		2.8
(-0.2)
A 		1
(-3)
A 		4
avr 1.9
(-2.3) 		2.7
(-1.4) 		1.3
(-3) 		6.6
(3) 		3.1
(-1) 		1.8
(-2.4) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177289_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19120
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.I NCBI
Target Description Y37E11AL.I /REP_DB=WormBase Gene ID /WP=CE21556 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59452.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y37E11AL.I
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y37E11AL.I Y37E11AL.I /REP_DB=WormBase Gene ID /WP=CE21556 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59452.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3665304-3667246(+) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177289_AT
cattctcccttgcagattacgtctggaaaatatggaagatttggggatggttgtgtacca
ttacaccgggagtaggtagaaaatttagctgcctatacgtatcttcgactgtaaaagatc
gcctggcaatcgcatcttaccttggtcagtgccagagttttcgcggcttccagctcctcc
tcatacaccacctgatcgtcgcgtcgaatcccgagccgatatttatctacagtgccgtac
tgcggatgttcccactcaaaaatctgatactcctcggtggccacattgacatgaagctcc
cggaccatggatacggtcactgggatcagagtgatgttggcgatagtgaacagctgaggg
cttccgtagtcgatcgccaagatctgcattctctgggccgaaattggcatttgtgccgtc
gtataaaacgcgcttctgctcgacttccactcaatccaatccacatcggtttcaagctgt
ccgaagcagtgacccagtggctca

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CATTCTCCCTTGCAGATTACGTCTG 467 215 170 Antisense
AAAGATCGCCTGGCAATCGCATCTT 326 123 283 Antisense
TCGCATCTTACCTTGGTCAGTGCCA 217 601 299 Antisense
TCAGTGCCAGAGTTTTCGCGGCTTC 551 621 315 Antisense
TACTGCGGATGTTCCCACTCAAAAA 434 647 407 Antisense
GTGGCCACATTGACATGAAGCTCCC 59 493 446 Antisense
TGAAGCTCCCGGACCATGGATACGG 626 559 461 Antisense
GATCGCCAAGATCTGCATTCTCTGG 270 417 541 Antisense
CGTATAAAACGCGCTTCTGCTCGAC 549 245 589 Antisense
CACTCAATCCAATCCACATCGGTTT 592 197 617 Antisense
TCCGAAGCAGTGACCCAGTGGCTCA 64 595 649 Antisense
Sequence Source Affymetrix Proprietary Database