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[177288_s_at]

Description BE10.1 /REP_DB=WormBase Gene ID /WP=CE17358 /TR=O17551 /GB=CAB07548.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 89      4grp_total > 54      6grp_rule_based > S6      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 53
1 2 3 4 range
A 41
(2.7)
A 		23.2
(-0.3)
A 		42.9
(3)
A 		7
(-3)
A 		36
B 59.6
(3)
A 		16.9
(-3)
A 		25.6
(-1.8)
A 		22.3
(-2.2)
A 		43
C 46.4
(2.4)
A 		48.5
(3)
A 		28
(-3)
A 		33
(-1.5)
A 		21
avr 49
(3) 		29.5
(-1.1) 		32.2
(-0.6) 		20.8
(-3) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 168
1 2 3 4 5 6 range
A 24.5
(-2.3)
A 		23.6
(-2.3)
A 		5.9
(-3)
A 		24.3
(-2.3)
A 		106.9
(1)
A 		156.9
(3)
P 		151
B 22.4
(-2.3)
A 		36.4
(-1.6)
A 		17
(-2.5)
A 		7.6
(-3)
A 		130.7
(2.9)
P 		132
(3)
P 		124
C 5
(-3)
A 		26.7
(-2.2)
A 		7.6
(-2.9)
A 		30.5
(-2.1)
A 		123.1
(1.2)
P 		173.3
(3)
P 		168
avr 17.3
(-2.7) 		28.9
(-2.2) 		10.2
(-3) 		20.8
(-2.6) 		120.2
(1.6) 		154.1
(3) 		144
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 14.9
(3)
A 		5
(-1.3)
A 		11.2
(1.4)
A 		1
(-3)
A 		14
B 19
(3)
A 		4.2
(-3)
A 		5.9
(-2.3)
A 		4.8
(-2.8)
A 		15
C 15.3
(3)
A 		13.9
(2.1)
A 		9.7
(-0.5)
A 		5.6
(-3)
A 		10
avr 16.4
(3) 		7.7
(-1.1) 		8.9
(-0.6) 		3.8
(-3) 		13

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 57
1 2 3 4 5 6 range
A 4.5
(-2.5)
A 		8.4
(-1.8)
A 		1.3
(-3)
A 		6.2
(-2.2)
A 		32.3
(2)
A 		38.2
(3)
P 		37
B 7.8
(-2.3)
A 		12.1
(-1.8)
A 		4.1
(-2.8)
A 		2
(-3)
A 		53.1
(3)
P 		49.2
(2.5)
P 		51
C 1.9
(-3)
A 		8.1
(-2.3)
A 		1.9
(-3)
A 		6.1
(-2.6)
A 		39.8
(1.1)
P 		58
(3)
P 		56
avr 4.7
(-2.7) 		9.5
(-2.1) 		2.4
(-3) 		4.8
(-2.7) 		41.7
(2.1) 		48.5
(3) 		46
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177288_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.6981
Sequence Type Exemplar sequence
Representative Public ID BE10.1 NCBI
Target Description BE10.1 /REP_DB=WormBase Gene ID /WP=CE17358 /TR=O17551 /GB=CAB07548.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067262(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067262 NCBI Caenorhabditis elegans BE10.1 (BE10.1) mRNA, complete cds. 11/11 None
GENEFINDER00000027558 ENSEMBL cdna:GeneFinder chromosome:CEL140:III:12787552:12789444:-1 11/11 None
BE10.1 ENSEMBL cdna:known chromosome:CEL140:III:12787552:12789350:-1 gene:BE10.1 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000027550 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12787547-12788761(-) 98.26 98.26
Public Domain and Genome References
Gene Title
Ensembl BE10.1
Entrez Gene 176693 Entrez gene
SwissProt O17551 EMBL-EBI
WormBase CE17358 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07548 Hypothetical protein BE10.1 [Caenorhabditis elegans] ref|NP_499663.1| BE10.1 [Caenorhabditis elegans] 1.0E-172
blast CAB07548 Hypothetical protein BE10.1 [Caenorhabditis elegans] ref|NP_499663.1| BE10.1 [Caenorhabditis elegans] 1.0E-169
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-127
blast CAH10784 Hypothetical protein R102.10 [Caenorhabditis elegans] ref|NP_001023338.1| R102.10 [Caenorhabditis elegans] 1.0E-123
blast CAE57010 Hypothetical protein CBG24882 [Caenorhabditis briggsae] 4.0E-83
blast CAE57010 Hypothetical protein CBG24882 [Caenorhabditis briggsae] 8.0E-80
Sequence
Target Sequence 
>C. ELEGANS:177288_S_AT
ttcgttggaagctaagtcgcccgtgcaatcggccaagaaaatttcgtcaatgatgaagtt
ttcaggaaaagctcgatgcgatggtccgtgtgctcgaattatcgaatggacagataccgt
catatttggatgtgatcatgtgatctgttcgggttgccgtaaaaaagcatcaagcactcc
attgttcgatggttctcccggatgttgtaatgagtattgtattcaacttgcaaaggcaaa
cggggataaggtctgcgttgggcaatcggaatctgttacctcgaacatttcgtacgccgg
agcaatcgaatcgattccaattcatgtctgcattctgaagaaccaaggtcacaatgttct
ccgagcccaattggaattggagttcccgtcttcggcgcggctttctgctattgtcagagc
cttgtttccttacaaagatctgttgaagaagtcccgcttctactacagcatccagaagcc
catgagccgagccgatctcctgccgatctcgctgactgacactaatcttcgtttccacga
tattgtcaacatgaattcggagccgattttgtacttgat

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCGTTGGAAGCTAAGTCGCCCGTG 14 693 375 Antisense
ATGGTCCGTGTGCTCGAATTATCGA 330 51 455 Antisense
CACTCCATTGTTCGATGGTTCTCCC 278 195 549 Antisense
TGGGCAATCGGAATCTGTTACCTCG 3 555 633 Antisense
CTCGAACATTTCGTACGCCGGAGCA 197 233 654 Antisense
AATCGATTCCAATTCATGTCTGCAT 320 169 683 Antisense
ACCAAGGTCACAATGTTCTCCGAGC 281 83 716 Antisense
TATTGTCAGAGCCTTGTTTCCTTAC 591 665 783 Antisense
TGAAGAAGTCCCGCTTCTACTACAG 45 573 818 Antisense
ACTACAGCATCCAGAAGCCCATGAG 470 101 836 Antisense
ATTCGGAGCCGATTTTGTACTTGAT 600 7 929 Antisense
Sequence Source Affymetrix Proprietary Database