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[177287_at]

Description Y71G10AL.B /REP_DB=WormBase Gene ID /WP=CE25573 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60867.1
Cluster 4grp_high_8_8 > 26      6grp_total > 37      4grp_total > 39      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 149.7
(3)
P 		75.6
(-3)
A 		82.6
(-2.4)
P 		119.2
(0.5)
P 		74
B 106.5
(2.7)
P 		106.9
(3)
A 		101.5
(-1)
P 		98.8
(-3)
M 		8
C 139.6
(3)
P 		107.3
(-1.6)
P 		97.7
(-3)
P 		101.1
(-2.5)
P 		42
avr 131.9
(3) 		96.6
(-2.6) 		93.9
(-3) 		106.4
(-1) 		38

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 67
1 2 3 4 5 6 range
A 98.3
(3)
A 		67.7
(-1.6)
A 		77.8
(-0.1)
A 		58
(-3)
A 		77.9
(-0)
A 		76.2
(-0.3)
A 		40
B 103.2
(3)
A 		97.2
(2.4)
A 		47.5
(-3)
A 		51.3
(-2.6)
A 		58.4
(-1.8)
A 		90.6
(1.6)
P 		56
C 61.3
(-0.5)
P 		82.2
(1.6)
A 		64.5
(-0.2)
A 		54
(-1.2)
A 		36.4
(-3)
A 		95.6
(3)
P 		59
avr 87.6
(3) 		82.4
(2.1) 		63.3
(-1.4) 		54.4
(-3) 		57.6
(-2.4) 		87.5
(3) 		33
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 38
1 2 3 4 range
A 54.5
(3)
P 		16.4
(-3)
A 		21.6
(-2.2)
P 		17.4
(-2.8)
P 		38
B 34
(3)
P 		26.4
(-0.5)
A 		23.5
(-1.9)
P 		21.1
(-3)
M 		13
C 46.2
(3)
P 		30.8
(-0.2)
P 		34
(0.5)
P 		17
(-3)
P 		29
avr 44.9
(3) 		24.5
(-1.6) 		26.4
(-1.2) 		18.5
(-3) 		26

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 18.1
(-0.8)
A 		24.1
(3)
A 		16.9
(-1.6)
A 		14.7
(-3)
A 		23.5
(2.6)
A 		18.6
(-0.5)
A 		9
B 35.9
(3)
A 		32.4
(2.1)
A 		11.5
(-3)
A 		13.6
(-2.5)
A 		23.7
(0)
A 		33.8
(2.5)
P 		24
C 22.7
(0.4)
P 		25.1
(1)
A 		16.4
(-1.4)
A 		10.9
(-3)
A 		11.8
(-2.7)
A 		32
(3)
P 		21
avr 25.6
(2) 		27.2
(2.6) 		14.9
(-2.3) 		13.1
(-3) 		19.7
(-0.4) 		28.1
(3) 		15
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177287_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19257
Sequence Type Exemplar sequence
Representative Public ID Y71G10AL.B NCBI
Target Description Y71G10AL.B /REP_DB=WormBase Gene ID /WP=CE25573 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60867.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_171899(11), NM_171284(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_171899 NCBI Caenorhabditis elegans Y71G10AL.1a (Y71G10AL.1) mRNA, complete cds. 11/11 None
NM_171284 NCBI Caenorhabditis elegans Y71G10AL.1b (Y71G10AL.1) mRNA, complete cds. 11/11 None
Y71G10AL.1a ENSEMBL cdna:known chromosome:CEL140:IV:2177906:2184626:1 gene:Y71G10AL.1 11/11 None
Y71G10AL.1b ENSEMBL cdna:known chromosome:CEL140:IV:2177915:2198870:1 gene:Y71G10AL.1 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:2177934-2182551(+) 91.4 100.0
Public Domain and Genome References
Ensembl Y71G10AL.1
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast NP_741334 Y71G10AL.1b [Caenorhabditis elegans] 0.0
blast AAM97980 Hypothetical protein Y71G10AL.1a [Caenorhabditis elegans] ref|NP_741335.1| Y71G10AL.1a [Caenorhabditis elegans] 1.0E-129
blast ABA00155 Hypothetical protein Y71G10AL.1b [Caenorhabditis elegans] 1.0E-126
blast NP_741334 Y71G10AL.1b [Caenorhabditis elegans] 1.0E-126
blast AAM97980 Hypothetical protein Y71G10AL.1a [Caenorhabditis elegans] ref|NP_741335.1| Y71G10AL.1a [Caenorhabditis elegans] 1.0E-125
blast ABA00155 Hypothetical protein Y71G10AL.1b [Caenorhabditis elegans] 1.0E-125
Sequence
Target Sequence 
>C. ELEGANS:177287_AT
aagaagcctgagccgccaaagaagaaggtttacgaagatgaagatgagaaggctccgttt
gaaatgtattgggatggagctccggaattccagtggagattatgcgaaggaccacgcgac
gagaaaaagctgataatcgataatttgttgtgggccgatttgaacaatgtcttcatctac
cgtacaattcaaaaatcgacaacgtgtgaaatcaactttccgactcgtttcaattccgat
ggaaatcgtacgtgtcacggaaaactgacactctttttcccgggaaatgttgcaattatg
gatgaggcactgaagcatttggtctatttccgtagtggagatggaagaagaattaaagtt
tttctgccacaaaccacagtttctttgaaacgaaaagaggaattcgagggaaaactcgga
agagttattaagccgaccgaacgaatgatgcagttgattgtgaagatccttcctgacggt
tatactccgacgctggatgaagcttgtgcttggttcccacttcaagcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAGAAGCCTGAGCCGCCAAAGAAGA 582 151 829 Antisense
GGGATGGAGCTCCGGAATTCCAGTG 613 495 899 Antisense
GAACAATGTCTTCATCTACCGTACA 133 353 990 Antisense
GAAATCAACTTTCCGACTCGTTTCA 240 361 1036 Antisense
TTCCGACTCGTTTCAATTCCGATGG 275 693 1046 Antisense
TGACACTCTTTTTCCCGGGAAATGT 290 563 1094 Antisense
GAAGCATTTGGTCTATTTCCGTAGT 17 337 1140 Antisense
AGTTTTTCTGCCACAAACCACAGTT 498 63 1185 Antisense
AGATCCTTCCTGACGGTTATACTCC 142 67 1292 Antisense
GTTATACTCCGACGCTGGATGAAGC 306 447 1307 Antisense
TTGTGCTTGGTTCCCACTTCAAGCC 646 705 1332 Antisense
Sequence Source Affymetrix Proprietary Database