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[177286_at]

Description BE10.3 /REP_DB=WormBase Gene ID /WP=CE15566 /TR=O17552 /GB=CAB07545.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Cluster 6grp_total > 93      4grp_total > 02      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 90
1 2 3 4 range
A 2.7
(-3)
A 		4.1
(-1.6)
A 		7.7
(1.8)
A 		8.9
(3)
A 		6
B 4.5
(0.9)
A 		5
(3)
A 		3.6
(-3)
A 		3.8
(-2.1)
A 		1
C 5.2
(-2.9)
A 		4.9
(-2.9)
A 		3.4
(-3)
A 		92.2
(3)
P 		89
avr 4.1
(-3) 		4.7
(-2.9) 		4.9
(-2.8) 		35
(3) 		31

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 24
1 2 3 4 5 6 range
A 12.4
(-0.4)
A 		3.8
(-2.5)
A 		14.2
(0.1)
A 		1.7
(-3)
A 		26.1
(3)
A 		3.3
(-2.6)
A 		24
B 5.5
(3)
A 		2.7
(-1.9)
A 		3.1
(-1.2)
A 		4
(0.4)
A 		2.1
(-3)
A 		3.1
(-1.2)
A 		3
C 3.7
(0.1)
A 		4.7
(3)
A 		3.4
(-0.7)
A 		4.3
(1.9)
A 		3.6
(-0.1)
A 		2.6
(-3)
A 		2
avr 7.2
(0.3) 		3.7
(-2.4) 		6.9
(0.1) 		3.3
(-2.8) 		10.6
(3) 		3
(-3) 		8
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15
1 2 3 4 range
A 1
(-2.5)
A 		0.9
(-3)
A 		2
(3)
A 		1.3
(-0.8)
A 		1
B 1.4
(3)
A 		1.2
(1)
A 		0.8
(-3)
A 		0.8
(-3)
A 		1
C 1.7
(-2.8)
A 		1.4
(-2.9)
A 		1.2
(-3)
A 		15.5
(3)
P 		14
avr 1.4
(-2.7) 		1.2
(-3) 		1.3
(-2.9) 		5.9
(3) 		5

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8
1 2 3 4 5 6 range
A 2.3
(-1.5)
A 		1.3
(-2.3)
A 		3.1
(-0.8)
A 		0.4
(-3)
A 		7.9
(3)
A 		0.8
(-2.7)
A 		8
B 1.9
(3)
A 		0.9
(-2.5)
A 		0.8
(-3)
A 		1.1
(-1.4)
A 		0.9
(-2.5)
A 		1.2
(-0.8)
A 		1
C 1.4
(3)
A 		1.4
(3)
A 		0.9
(-3)
A 		0.9
(-3)
A 		1.2
(0.6)
A 		0.9
(-3)
A 		0
avr 1.9
(-0.4) 		1.2
(-2) 		1.6
(-1.1) 		0.8
(-3) 		3.3
(3) 		1
(-2.5) 		3
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177286_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.7187
Sequence Type Exemplar sequence
Representative Public ID BE10.3 NCBI
Target Description BE10.3 /REP_DB=WormBase Gene ID /WP=CE15566 /TR=O17552 /GB=CAB07545.1 /SUBMIT=HINXTON /CHR=3 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067264(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067264 NCBI Caenorhabditis elegans BE10.3 (BE10.3) mRNA, complete cds. 11/11 None
BE10.3 ENSEMBL cdna:known chromosome:CEL140:III:12807964:12812496:1 gene:BE10.3 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
GENEFINDER00000027562 7/11 Cross Hyb Matching Probes None
SNAP00000027557 5/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIII:12807959-12812492(+) 94.02 100.0
Public Domain and Genome References
Gene Title
Ensembl BE10.3
Entrez Gene 182048 Entrez gene
SwissProt O17552 EMBL-EBI
WormBase CE15566 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07545 Hypothetical protein BE10.3 [Caenorhabditis elegans] ref|NP_499665.1| BE10.3 [Caenorhabditis elegans] 0.0
blast CAD91711 Hypothetical protein Y48A6C.5b [Caenorhabditis elegans] ref|NP_001022891.1| defective PHArynx development family member (pha-1) [Caenorhabditis elegans] 1.0E-40
blast CAB55091 Hypothetical protein Y47D3A.1 [Caenorhabditis elegans] ref|NP_499436.1| Y47D3A.1 [Caenorhabditis elegans] 4.0E-39
Protein Domains
Database ID Description E-Value
Pfam IPR009497 EMBL-EBI Protein of unknown function DUF1114 1.0E-126
Sequence
Target Sequence 
>C. ELEGANS:177286_AT
tctccgagctctccgacgataagaaattccaaaataacagtcaagctttatccaatgagc
tcacagcttatttctagaacagctccagtcttcaactacagaacacagaatgtgccggag
attttgaattctggtgctcggcttgtctccgggccaatagatcaaattcaaaaaaattca
aaagactactttcacctgaaagatatagtctcaataccagacgatagatcaattggatat
cgaactcaagttcatatttggaagggaagaaggttttgtttggaacacgaaatggccaat
tgcacgatagattttgaaatttattttgaaattgaatttttggagaagttcttcaggaag
aggcctgatgttaagggagctggatttttgagacatttttggacacctgagttactggcg
caccggcaagtttttggaaatatcacccagacgcaaattgcgcaaagttttgtgattttg
cggaattttcatcaaattttcttcagttttttaaacataacacggcccgagaagttgtgc
ctgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TCTCCGAGCTCTCCGACGATAAGAA 34 611 1195 Antisense
GCTTTATCCAATGAGCTCACAGCTT 202 305 1239 Antisense
GAGCTCACAGCTTATTTCTAGAACA 535 387 1251 Antisense
TTTGAATTCTGGTGCTCGGCTTGTC 397 665 1317 Antisense
CTTGTCTCCGGGCCAATAGATCAAA 419 215 1336 Antisense
GGAACACGAAATGGCCAATTGCACG 378 529 1476 Antisense
GGGAGCTGGATTTTTGAGACATTTT 357 495 1569 Antisense
TTTGGACACCTGAGTTACTGGCGCA 73 665 1592 Antisense
TGGCGCACCGGCAAGTTTTTGGAAA 710 535 1610 Antisense
AATATCACCCAGACGCAAATTGCGC 661 173 1633 Antisense
ACACGGCCCGAGAAGTTGTGCCTGT 655 109 1714 Antisense
Sequence Source Affymetrix Proprietary Database