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[177284_at]

Description Y54E10BR.E /REP_DB=WormBase Gene ID /WP=CE22467 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59552.1
Cluster 6grp_total > 90      4grp_total > 01      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 213
1 2 3 4 range
A 39
(-2.9)
A 		34.7
(-3)
A 		63.1
(-2.1)
A 		229.4
(3)
M 		195
B 27.6
(-3)
A 		59.4
(-0.8)
A 		63.2
(-0.5)
A 		112.5
(3)
A 		85
C 47.7
(-1.6)
A 		16.4
(-3)
A 		27.7
(-2.5)
A 		154.9
(3)
A 		139
avr 38.1
(-2.9) 		36.8
(-3) 		51.3
(-2.3) 		165.6
(3) 		129

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 58
1 2 3 4 5 6 range
A 54.5
(3)
A 		21.1
(-1.4)
A 		50.5
(2.5)
A 		18.2
(-1.8)
A 		41.9
(1.3)
A 		8.9
(-3)
A 		46
B 13.1
(-1.7)
A 		36.3
(1.4)
A 		3.6
(-3)
A 		48
(3)
A 		36.7
(1.5)
A 		41.4
(2.1)
A 		44
C 31.6
(-0.6)
A 		56.4
(2.4)
A 		34.6
(-0.2)
A 		61.1
(3)
A 		11.8
(-3)
A 		22.7
(-1.7)
A 		49
avr 33.1
(-0.1) 		37.9
(1.5) 		29.6
(-1.2) 		42.4
(3) 		30.1
(-1.1) 		24.3
(-3) 		18
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 29
1 2 3 4 range
A 14.2
(-1.5)
A 		7.5
(-3)
A 		16.5
(-0.9)
A 		33.6
(3)
M 		26
B 8.8
(-3)
A 		14.7
(-0.7)
A 		14.6
(-0.7)
A 		24
(3)
A 		15
C 15.8
(0.1)
A 		4.7
(-3)
A 		9.7
(-1.6)
A 		26.1
(3)
A 		21
avr 12.9
(-1.8) 		9
(-3) 		13.6
(-1.5) 		27.9
(3) 		19

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 10
(1.5)
A 		7.5
(0.1)
A 		11
(2.1)
A 		4.6
(-1.6)
A 		12.6
(3)
A 		2.2
(-3)
A 		10
B 4.6
(-1.5)
A 		12.1
(1.6)
A 		0.9
(-3)
A 		12.7
(1.9)
A 		14.9
(2.8)
A 		15.4
(3)
A 		15
C 11.7
(0.5)
A 		17.2
(3)
A 		8.8
(-0.8)
A 		12.3
(0.8)
A 		3.8
(-3)
A 		7.6
(-1.3)
A 		13
avr 8.8
(-0.9) 		12.3
(3) 		6.9
(-3) 		9.9
(0.3) 		10.4
(0.9) 		8.4
(-1.3) 		5
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177284_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.18696
Sequence Type Exemplar sequence
Representative Public ID Y54E10BR.E NCBI
Target Description Y54E10BR.E /REP_DB=WormBase Gene ID /WP=CE22467 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59552.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Design Representative Id based pipeline to a Affymetrix Proprietary Database identifier using 1 transcript(s).
Annotation Grade This is a grade R annotation.
Annotation Transcript Cluster (# of Matching Probes) Y54E10BR.E
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
Y54E10BR.E Y54E10BR.E /REP_DB=WormBase Gene ID /WP=CE22467 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59552.1 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_058689 11/11 Negative Strand Matching Probes A B 
SNAP00000038968 11/11 Negative Strand Matching Probes None
GENEFINDER00000038975 11/11 Negative Strand Matching Probes None
Y54E10BR.4 11/11 Negative Strand Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:3018276-3018585(-) 100.0 100.0
Sequence
Target Sequence 
>C. ELEGANS:177284_AT
gtccacacgccggacagaattccttcgtcataacacttgtcgtcgagaagcaagtccgac
agcggagcacgaacgatttaagcttgcgaatacggtagccagacaacgagacgaggctca
gattcattgcgagaagcacattttgaagagcgaaatcagtggtcaggcagccgacaagca
tgttctcctcgatttcaaaagctccaagttttttgagagtttcttcaatattgtcctgcg
tgatccagccgtcctcatcgaagctctcggagctct

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCCACACGCCGGACAGAATTCCTT 281 473 15 Antisense
GAATTCCTTCGTCATAACACTTGTC 363 315 31 Antisense
GTCCGACAGCGGAGCACGAACGATT 686 475 68 Antisense
TACGGTAGCCAGACAACGAGACGAG 357 647 105 Antisense
GAGACGAGGCTCAGATTCATTGCGA 64 393 122 Antisense
GAGCGAAATCAGTGGTCAGGCAGCC 272 387 162 Antisense
TCAGGCAGCCGACAAGCATGTTCTC 374 623 177 Antisense
TTCTCCTCGATTTCAAAAGCTCCAA 595 693 197 Antisense
GAGAGTTTCTTCAATATTGTCCTGC 572 395 229 Antisense
CAATATTGTCCTGCGTGATCCAGCC 335 181 240 Antisense
TCCTCATCGAAGCTCTCGGAGCTCT 12 593 266 Antisense
Sequence Source Affymetrix Proprietary Database