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[177283_at]

Description ZK6.3 /REP_DB=WormBase Gene ID /WP=CE18440 /TR=O61870 /GB=AAG45571.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 92      4grp_total > 10      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6
1 2 3 4 range
A 2.8
(-2.3)
A 		3.2
(-0.9)
A 		2.6
(-3)
A 		4.3
(3)
A 		2
B 1.9
(-2.3)
A 		1.7
(-3)
A 		2
(-2)
A 		3.5
(3)
A 		2
C 2.6
(-3)
A 		2.9
(-2.6)
A 		3
(-2.5)
A 		7.7
(3)
A 		5
avr 2.4
(-3) 		2.6
(-2.6) 		2.5
(-2.8) 		5.2
(3) 		3

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 2.3
(-2)
A 		2.3
(-2)
A 		2.5
(-1.8)
A 		1.5
(-3)
A 		6.5
(3)
A 		2
(-2.4)
A 		5
B 1.3
(-1.7)
A 		2.1
(1.7)
A 		2.3
(2.6)
A 		2.4
(3)
A 		1
(-3)
A 		1
(-3)
A 		1
C 1.6
(-2.3)
A 		4
(3)
A 		2.1
(-1.2)
A 		2.6
(-0.1)
A 		1.3
(-3)
A 		1.6
(-2.3)
A 		3
avr 1.7
(-2.1) 		2.8
(2.6) 		2.3
(0.4) 		2.2
(0) 		2.9
(3) 		1.5
(-3) 		1
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1
1 2 3 4 range
A 1
(3)
A 		0.7
(-1.5)
A 		0.7
(-1.5)
A 		0.6
(-3)
A 		0
B 0.6
(-0)
A 		0.4
(-3)
A 		0.5
(-1.5)
A 		0.8
(3)
A 		0
C 0.9
(-1.8)
A 		0.8
(-3)
A 		1
(-0.6)
A 		1.3
(3)
A 		1
avr 0.8
(1) 		0.6
(-3) 		0.7
(-1) 		0.9
(3) 		0

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 2
1 2 3 4 5 6 range
A 0.4
(-3)
A 		0.8
(-1.5)
A 		0.6
(-2.3)
A 		0.4
(-3)
A 		2
(3)
A 		0.5
(-2.6)
A 		2
B 0.4
(-3)
A 		0.7
(3)
A 		0.6
(1)
A 		0.6
(1)
A 		0.4
(-3)
A 		0.4
(-3)
A 		0
C 0.6
(-1.5)
A 		1.2
(3)
A 		0.5
(-2.3)
A 		0.5
(-2.3)
A 		0.4
(-3)
A 		0.5
(-2.3)
A 		1
avr 0.5
(-3) 		0.9
(3) 		0.6
(-1.5) 		0.5
(-3) 		0.9
(3) 		0.5
(-3) 		0
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177283_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15951
Sequence Type Exemplar sequence
Representative Public ID ZK6.3 NCBI
Target Description ZK6.3 /REP_DB=WormBase Gene ID /WP=CE18440 /TR=O61870 /GB=AAG45571.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070788(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070788 NCBI Caenorhabditis elegans ZK6.3 (ZK6.3) mRNA, complete cds. 9/11 None
SNAP00000041440 ENSEMBL cdna:SNAP chromosome:CEL140:V:400086:401431:1 9/11 None
GENEFINDER00000041453 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:400086:401431:1 11/11 None
ZK6.3 ENSEMBL cdna:known chromosome:CEL140:V:400086:401431:1 gene:ZK6.3 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:400085-401431(+) 96.89 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK6.3
Entrez Gene 191204 Entrez gene
SwissProt O61870 EMBL-EBI
WormBase CE36078 Wormbase
Functional Annotations
Gene Ontology
GO Cellular Component (view graph)
ID Description Evidence Links
5576 extracellular region inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAG45571 Hypothetical protein ZK6.3 [Caenorhabditis elegans] ref|NP_503189.2| ZK6.3 [Caenorhabditis elegans] 1.0E-109
blast AAG45571 Hypothetical protein ZK6.3 [Caenorhabditis elegans] ref|NP_503189.2| ZK6.3 [Caenorhabditis elegans] 1.0E-105
blast CAB07484 Hypothetical protein T19C9.5 [Caenorhabditis elegans] ref|NP_507364.1| T19C9.5 [Caenorhabditis elegans] 2.0E-23
blast CAA16500 Hypothetical protein F08E10.7 [Caenorhabditis elegans] ref|NP_507429.1| F08E10.7 [Caenorhabditis elegans] 1.0E-22
Protein Domains
Database ID Description E-Value
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.2E-21
Pfam IPR001283 EMBL-EBI Allergen V5/Tpx-1 related 2.4E-21
Sequence
Target Sequence 
>C. ELEGANS:177283_AT
caaaatcacagtgactaccccaaggcttctcagatgatgatgatgaaatggaaccagtct
ttggccgaagctgtcggaaatgtcaaacattcttgtcagcaattaaaagagcgatatttg
aaaaaattcattaaaggagagaacctctacagagtttacttttataatacggtagtagat
aatttccagaaattttcagatctctctccgaagatttctagaggtttatcaatgatttta
aacttttctaaaggcttgcaagaacgtgatgaaattttacgaagatctgaaaaagcagtt
agtacaggagctaattttgaagttgaacgatttcataagatacttcatgacaaggtgact
tcaatcggatgtagctacaagaactgtgaaaatgatcaaggttatgacatgcgttatttc
atatgcaagtatagtccaatagataatggagatatgtaccacgtaggagagccatgcagt
cagtgtccagttggtacctcgtgc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAAAATCACAGTGACTACCCCAAGG 20 191 142 Antisense
GAACCAGTCTTTGGCCGAAGCTGTC 219 345 192 Antisense
AATGTCAAACATTCTTGTCAGCAAT 99 165 220 Antisense
GAGAACCTCTACAGAGTTTACTTTT 430 391 280 Antisense
CAGAAATTTTCAGATCTCTCTCCGA 233 205 328 Antisense
AGATCTCTCTCCGAAGATTTCTAGA 161 67 339 Antisense
GATACTTCATGACAAGGTGACTTCA 695 423 480 Antisense
GGTGACTTCAATCGGATGTAGCTAC 308 501 495 Antisense
GATATGTACCACGTAGGAGAGCCAT 630 425 592 Antisense
GGAGAGCCATGCAGTCAGTGTCCAG 517 519 607 Antisense
TCAGTGTCCAGTTGGTACCTCGTGC 319 623 621 Antisense
Sequence Source Affymetrix Proprietary Database