[Home] | [Total List]

[177282_s_at]

Description ZC15.3 /REP_DB=WormBase Gene ID /WP=CE16685 /TR=O18267 /GB=CAB07711.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 29      4grp_total > 36      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 84.7
(2.8)
A 		87.3
(3)
A 		13.7
(-3)
A 		81.9
(2.6)
A 		74
B 14.7
(-3)
A 		75.8
(3)
A 		20.4
(-2.4)
A 		49.9
(0.5)
A 		61
C 47.2
(3)
A 		36
(0.2)
A 		23.4
(-3)
A 		44.9
(2.4)
A 		24
avr 48.9
(0.8) 		66.4
(3) 		19.2
(-3) 		58.9
(2) 		47

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 64
1 2 3 4 5 6 range
A 29.8
(-0.9)
A 		36.7
(-0.2)
A 		9.4
(-3)
A 		39.2
(0.1)
A 		68
(3)
A 		10.4
(-2.9)
A 		59
B 55.4
(3)
A 		18.1
(-1.8)
A 		30.4
(-0.2)
A 		8.7
(-3)
A 		10.7
(-2.7)
A 		18.3
(-1.8)
A 		47
C 72.9
(3)
A 		41.6
(-0.2)
A 		63.5
(2.1)
A 		13.5
(-3)
A 		72.4
(2.9)
A 		33.5
(-1)
A 		59
avr 52.7
(3) 		32.1
(-0.8) 		34.4
(-0.4) 		20.5
(-3) 		50.4
(2.6) 		20.7
(-3) 		32
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 27
1 2 3 4 range
A 30.8
(3)
A 		18.9
(0.4)
A 		3.6
(-3)
A 		12
(-1.1)
A 		27
B 4.7
(-3)
A 		18.7
(3)
A 		4.7
(-3)
A 		10.6
(-0.5)
A 		14
C 15.6
(3)
A 		10.4
(-0.9)
A 		8.1
(-2.6)
A 		7.6
(-3)
A 		8
avr 17
(3) 		16
(2.5) 		5.5
(-3) 		10.1
(-0.6) 		12

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 25
1 2 3 4 5 6 range
A 5.5
(-1.9)
A 		13.1
(0.6)
A 		2.1
(-3)
A 		9.9
(-0.5)
A 		20.5
(3)
A 		2.5
(-2.9)
A 		18
B 19.3
(3)
A 		6
(-1.7)
A 		7.4
(-1.2)
A 		2.3
(-3)
A 		4.3
(-2.3)
A 		6.8
(-1.4)
A 		17
C 27
(3)
A 		12.7
(-0.5)
A 		16.2
(0.3)
A 		2.7
(-3)
A 		23.4
(2.1)
A 		11.2
(-0.9)
A 		24
avr 17.3
(3) 		10.6
(-0.3) 		8.6
(-1.2) 		5
(-3) 		16.1
(2.4) 		6.8
(-2.1) 		12
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177282_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.12844
Sequence Type Exemplar sequence
Representative Public ID ZC15.3 NCBI
Target Description ZC15.3 /REP_DB=WormBase Gene ID /WP=CE16685 /TR=O18267 /GB=CAB07711.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_078318(11), NM_075514(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_078318 NCBI Caenorhabditis elegans F41G4.7 (F41G4.7) mRNA, complete cds. 11/11 A 
NM_075514 NCBI Caenorhabditis elegans ZC15.3 (ZC15.3) mRNA, complete cds. 11/11 None
SNAP00000015578 ENSEMBL cdna:SNAP chromosome:CEL140:V:20301671:20302858:1 11/11 None
GENEFINDER00000015584 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20301671:20302858:1 11/11 None
SNAP00000036411 ENSEMBL cdna:SNAP chromosome:CEL140:X:16833595:16834704:-1 11/11 None
GENEFINDER00000036422 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:16833595:16834704:-1 11/11 None
ZC15.3 ENSEMBL cdna:known chromosome:CEL140:V:20301639:20302959:1 gene:ZC15.3 11/11 None
F41G4.7 ENSEMBL cdna:known chromosome:CEL140:X:16833501:16836308:-1 gene:F41G4.7 11/11 A 
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20301670-20302858(+) 85.27 100.0
chrX:16833621-16834704(-) 81.69 96.22
Public Domain and Genome References
Gene Title

Ensembl ZC15.3
F41G4.7
Entrez Gene 180331 Entrez gene
181732 Entrez gene
SwissProt Q8WTN3 EMBL-EBI
O18267 EMBL-EBI
WormBase CE29799 Wormbase
CE16685 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 0.0
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 0.0
blast CAB07711 Hypothetical protein ZC15.3 [Caenorhabditis elegans] ref|NP_507915.1| ZC15.3 [Caenorhabditis elegans] 1.0E-168
blast AAK85487 Hypothetical protein F41G4.7 [Caenorhabditis elegans] ref|NP_510719.2| F41G4.7 [Caenorhabditis elegans] 1.0E-129
Sequence
Target Sequence 
>C. ELEGANS:177282_S_AT
aggtctcaggaatgttccagcgcgcggacatgatgtctgccaacgtccaggagcagcgaa
ctcaacaagccgaggacaatcgtatggcctccaaagcgagagacaggatcatttacgaca
tcgctcaggtcgccaccaacatgaagacgatgagcgaaaccatcgccaaaatcgacgctc
gtgaggaacaggctgcccaaaagcaagccgagcgccacaccccacaaggaggacagggat
cgttggagccagcgctgaagtgcccactgtgcaagcgtcatcacgctccggaaaactgca
ccattataagaaatggactcgatcgtcgcgaggaagccgaaaagatcaaaatgtgcattc
aatgcctcgaagtcggcgtgacaaatgacgattgggtccacgaaggctgcccaaaggaga
aggagcagtgcaccagatgcaccaaatacatgaagccaggagaaatcgcccagactcacc
acaacgccacattctgcctaatgctcacctcgaagcagtacaagctcgagcgcaagggat
ccccatccgatcgtgattactcgccaaaaggcc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AGGTCTCAGGAATGTTCCAGCGCGC 88 57 428 Antisense
ATGTCTGCCAACGTCCAGGAGCAGC 386 47 460 Antisense
GGAGCAGCGAACTCAACAAGCCGAG 411 519 477 Antisense
GCTCGTGAGGAACAGGCTGCCCAAA 228 297 604 Antisense
TCATCACGCTCCGGAAAACTGCACC 356 621 705 Antisense
GGACTCGATCGTCGCGAGGAAGCCG 653 523 742 Antisense
GCATTCAATGCCTCGAAGTCGGCGT 98 309 782 Antisense
TGACGATTGGGTCCACGAAGGCTGC 592 569 813 Antisense
AGCCAGGAGAAATCGCCCAGACTCA 391 83 881 Antisense
GCCTAATGCTCACCTCGAAGCAGTA 516 281 923 Antisense
GATCGTGATTACTCGCCAAAAGGCC 498 417 976 Antisense
Sequence Source Affymetrix Proprietary Database