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[177279_at]

Description M60.3 /REP_DB=WormBase Gene ID /WP=CE02832 /TR=Q9GYN1 /GB=AAF99991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 83      6grp_high1_10_10 > 48      4grp_highest_8_8 > 53      4grp_high_8_8 > 09      6grp_highest_nonorm > 06      6grp_total > 48      4grp_total > 23      6grp_highest_sub > Cu      6grp_high1_sub > Cu      6grp_total_sub > Cup      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 6444
1 2 3 4 range
A 9411.1
(3)
P 		2967.3
(-3)
P 		3802.2
(-2.2)
P 		7652.3
(1.4)
P 		6444
B 9054.8
(3)
P 		4132.4
(-2)
P 		3194.4
(-3)
P 		8415.8
(2.3)
P 		5860
C 8192.8
(3)
P 		4417
(-1.6)
P 		3268.1
(-3)
P 		6851.1
(1.4)
P 		4925
avr 8886.2
(3) 		3838.9
(-2.5) 		3421.6
(-3) 		7639.7
(1.6) 		5465

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6903
1 2 3 4 5 6 range
A 11047.4
(1.3)
P 		8944.3
(-0.9)
P 		8710.3
(-1.2)
P 		6982.4
(-3)
P 		8153.9
(-1.8)
P 		12668.1
(3)
P 		5686
B 11587.9
(3)
P 		9281.3
(0.6)
P 		5914.7
(-3)
P 		6683.5
(-2.2)
P 		7753
(-1.1)
P 		9292.2
(0.6)
P 		5673
C 11770.8
(2.6)
P 		9225.6
(0.2)
P 		8254.8
(-0.7)
P 		5765.5
(-3)
P 		7832.9
(-1.1)
P 		12160.4
(3)
P 		6395
avr 11468.7
(3) 		9150.4
(0.2) 		7626.6
(-1.6) 		6477.1
(-3) 		7913.3
(-1.3) 		11373.6
(2.9) 		4992
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2783
1 2 3 4 range
A 3426.6
(3)
P 		644.1
(-3)
P 		994
(-2.2)
P 		1120.2
(-2)
P 		2783
B 2887.5
(3)
P 		1020.6
(-2.2)
P 		740.2
(-3)
P 		1793.4
(-0.1)
P 		2147
C 2712
(3)
P 		1269.9
(-2.5)
P 		1139
(-3)
P 		1155.2
(-2.9)
P 		1573
avr 3008.7
(3) 		978.2
(-2.9) 		957.7
(-3) 		1356.3
(-1.8) 		2051

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3204
1 2 3 4 5 6 range
A 2036.5
(-1.9)
P 		3181
(3)
P 		1896.9
(-2.5)
P 		1770.9
(-3)
P 		2460.5
(-0.1)
P 		3084.3
(2.6)
P 		1410
B 4032
(3)
P 		3089.4
(0.8)
P 		1436.3
(-3)
P 		1770.2
(-2.2)
P 		3150
(1)
P 		3465
(1.7)
P 		2596
C 4362.9
(3)
P 		2815
(0.1)
P 		2101
(-1.2)
P 		1159.4
(-3)
P 		2534.6
(-0.4)
P 		4070.8
(2.5)
P 		3204
avr 3477.1
(2.8) 		3028.5
(1.4) 		1811.4
(-2.3) 		1566.8
(-3) 		2715
(0.5) 		3540
(3) 		1973
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177279_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.17167
Sequence Type Exemplar sequence
Representative Public ID M60.3 NCBI
Target Description M60.3 /REP_DB=WormBase Gene ID /WP=CE02832 /TR=Q9GYN1 /GB=AAF99991.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_001029645(11), NM_001029644(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_001029645 NCBI Caenorhabditis elegans M60.4b (M60.4) mRNA, complete cds. 11/11 None
NM_001029644 NCBI Caenorhabditis elegans M60.4a (M60.4) mRNA, complete cds. 11/11 None
GENEFINDER00000012329 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8232382:8236252:-1 11/11 None
M60.4b.2 ENSEMBL cdna:known chromosome:CEL140:X:8232094:8232916:-1 gene:M60.4 11/11 None
M60.4b.1 ENSEMBL cdna:known chromosome:CEL140:X:8232186:8232909:-1 gene:M60.4 11/11 None
M60.4b.3 ENSEMBL cdna:known chromosome:CEL140:X:8232186:8236252:-1 gene:M60.4 11/11 None
M60.4a ENSEMBL cdna:known chromosome:CEL140:X:8232382:8236252:-1 gene:M60.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8232380-8232907(-) 100.0 100.0
Public Domain and Genome References
Ensembl M60.4
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAP40520 Hypothetical protein M60.4a [Caenorhabditis elegans] ref|NP_001024815.1| M60.4a [Caenorhabditis elegans] 2.0E-80
blast CAE74862 Hypothetical protein CBG22717 [Caenorhabditis briggsae] 1.0E-75
blast AAP40520 Hypothetical protein M60.4a [Caenorhabditis elegans] ref|NP_001024815.1| M60.4a [Caenorhabditis elegans] 4.0E-75
blast AAP40521 Hypothetical protein M60.4b [Caenorhabditis elegans] ref|NP_001024816.1| M60.4b [Caenorhabditis elegans] pir||T28849 hypothetical protein M60.3 - Caenorhabditis elegans 4.0E-75
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_001024816.1 4 15-37,49-71,81-103,110-128
NP_001024815.1 4 40-62,72-94,106-128,133-151
M60.4b.2 4 15-37,49-71,81-103,110-128
M60.4b.1 4 15-37,49-71,81-103,110-128
M60.4b.3 4 15-37,49-71,81-103,110-128
M60.4a 4 40-62,72-94,106-128,133-151
GENEFINDER00000012329 4 40-62,72-94,106-128,133-151
Sequence
Target Sequence 
>C. ELEGANS:177279_AT
gatttcattgaacactcactacctctccaccaaccgtggaattatcaagatcctccaaat
tattgcaggattcatcatctgctccctcctctgtagtcagtggtacggaggacgttcctg
cttcggcgagggtcgtctcggtttttcctctggactcaactttgtctgcgtcattgtcaa
catcgttctcttcatcctgaacttcctcaacatcagagcctggggactggaaagaatcta
caccgttatttgcactatcctcttcctcatcgcatccatcctcatcgtctggttcgtcat
cgaggtcaactcgtcccgtggatggctcattgcgagtgccgt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GATTTCATTGAACACTCACTACCTC 36 429 21 Antisense
TTGCAGGATTCATCATCTGCTCCCT 405 703 83 Antisense
TCCCTCCTCTGTAGTCAGTGGTACG 436 597 103 Antisense
GTTTTTCCTCTGGACTCAACTTTGT 182 449 161 Antisense
CAACTTTGTCTGCGTCATTGTCAAC 160 189 177 Antisense
CATTGTCAACATCGTTCTCTTCATC 668 217 192 Antisense
ACTTCCTCAACATCAGAGCCTGGGG 671 103 221 Antisense
TCTACACCGTTATTTGCACTATCCT 541 613 257 Antisense
TCATCGTCTGGTTCGTCATCGAGGT 591 621 302 Antisense
TCGTCATCGAGGTCAACTCGTCCCG 19 605 314 Antisense
GTGGATGGCTCATTGCGAGTGCCGT 606 489 338 Antisense
Sequence Source Affymetrix Proprietary Database