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[177277_at]

Description ZC15.2 /REP_DB=WormBase Gene ID /WP=CE23440 /TR=O18266 /GB=CAB07710.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 90      4grp_total > 63      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 71
1 2 3 4 range
A 44
(-2)
A 		37.4
(-3)
A 		76.3
(3)
P 		38.6
(-2.8)
A 		39
B 54.2
(0.9)
A 		78.5
(3)
A 		38.9
(-0.4)
A 		8.8
(-3)
A 		70
C 32.6
(-1)
A 		8.6
(-3)
A 		15.9
(-2.4)
A 		79.8
(3)
A 		71
avr 43.6
(2.7) 		41.5
(-3) 		43.7
(3) 		42.4
(-0.5) 		2

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 76
1 2 3 4 5 6 range
A 29.1
(0.4)
A 		19
(-1.3)
A 		8.2
(-3)
A 		45.4
(3)
A 		45
(2.9)
P 		8.9
(-2.9)
A 		37
B 36.9
(3)
A 		31.4
(2)
A 		18.3
(-0.4)
A 		32.6
(2.2)
A 		3.6
(-3)
A 		31.3
(2)
A 		33
C 16
(-2.2)
A 		56.4
(1.1)
A 		6.7
(-3)
A 		79.3
(3)
A 		39.2
(-0.3)
A 		11.2
(-2.6)
A 		73
avr 27.3
(-0.6) 		35.6
(0.6) 		11.1
(-3) 		52.4
(3) 		29.3
(-0.4) 		17.1
(-2.1) 		41
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 18
1 2 3 4 range
A 16
(1.4)
A 		8.1
(-2)
A 		19.9
(3)
P 		5.7
(-3)
A 		14
B 17.3
(2.3)
A 		19.4
(3)
A 		9
(-0.6)
A 		1.9
(-3)
A 		18
C 10.8
(1.5)
A 		2.5
(-3)
A 		5.5
(-1.4)
A 		13.5
(3)
A 		11
avr 14.7
(3) 		10
(-0.7) 		11.5
(0.5) 		7
(-3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 16
1 2 3 4 5 6 range
A 5.4
(-1.2)
A 		6.8
(-0.5)
A 		1.8
(-3)
A 		11.5
(1.9)
A 		13.6
(3)
P 		2.2
(-2.8)
A 		12
B 12.8
(3)
A 		10.5
(1.8)
A 		4.4
(-1.5)
A 		8.6
(0.8)
A 		1.5
(-3)
A 		11.7
(2.4)
A 		11
C 5.9
(-1.4)
A 		17.2
(3)
A 		1.7
(-3)
A 		15.9
(2.5)
A 		12.7
(1.3)
A 		3.7
(-2.2)
A 		16
avr 8
(0.4) 		11.5
(2.7) 		2.6
(-3) 		12
(3) 		9.3
(1.3) 		5.9
(-0.9) 		9
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177277_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.13063
Sequence Type Exemplar sequence
Representative Public ID ZC15.2 NCBI
Target Description ZC15.2 /REP_DB=WormBase Gene ID /WP=CE23440 /TR=O18266 /GB=CAB07710.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075516(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075516 NCBI Caenorhabditis elegans ZC15.2 (ZC15.2) mRNA, complete cds. 11/11 None
GENEFINDER00000018177 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20310247:20313679:1 11/11 None
ZC15.2 ENSEMBL cdna:known chromosome:CEL140:V:20307179:20313679:1 gene:ZC15.2 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000018174 4/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20307178-20313679(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC15.2
Entrez Gene 191051 Entrez gene
SwissProt O18266 EMBL-EBI
WormBase CE23440 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 0.0
blast CAA22060 Hypothetical protein ZC15.2 [Caenorhabditis elegans] emb|CAB07710.1| Hypothetical protein ZC15.2 [Caenorhabditis elegans] ref|NP_507917.1| ZC15.2 [Caenorhabditis elegans] 1.0E-161
blast CAE66187 Hypothetical protein CBG11425 [Caenorhabditis briggsae] 1.0E-100
blast CAE66187 Hypothetical protein CBG11425 [Caenorhabditis briggsae] 1.0E-90
blast CAE67438 Hypothetical protein CBG12930 [Caenorhabditis briggsae] 9.0E-79
blast CAB03246 Hypothetical protein R10D12.5 [Caenorhabditis elegans] ref|NP_506460.1| R10D12.5 [Caenorhabditis elegans] 7.0E-46
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000018177 1 39-61
Sequence
Target Sequence 
>C. ELEGANS:177277_AT
gaattggtgtctccaggtgttcggcagtcccagcgtaagctacactcaagcggacgcaat
tcataactgtaccaacattgggacggttctaagtggtctggaaacattggacgagcggga
ttttgtggccgccggagcattgaccctgctgggtgccgggtaccccgagtttgcagccgt
ctgggtatctgggatgaggaagcccgagtgttattcggatggatgggagaatttggcgga
gtgtgcggggactaatatggagcaattcacatataccgacacttacatggcgaactatgc
cggctacacatgggatcccaacactcctgaccgaaattcgacaggcgtatggcaaaactg
cattcaaatgtggattcgtatagagtctgtgagcccggattttccatatgacactaaccc
aaatggcaactctgatgatgccacatgtaacgtggcagattctgacgatttcagcctacg
tggatttgcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GAATTGGTGTCTCCAGGTGTTCGGC 618 323 1347 Antisense
GTCCCAGCGTAAGCTACACTCAAGC 634 475 1373 Antisense
GCGGACGCAATTCATAACTGTACCA 662 291 1396 Antisense
ATTTTGTGGCCGCCGGAGCATTGAC 658 13 1466 Antisense
TTTGCAGCCGTCTGGGTATCTGGGA 225 669 1516 Antisense
ATACCGACACTTACATGGCGAACTA 465 23 1619 Antisense
TGGCGAACTATGCCGGCTACACATG 54 545 1634 Antisense
CAACACTCCTGACCGAAATTCGACA 567 187 1665 Antisense
GTATAGAGTCTGTGAGCCCGGATTT 360 451 1724 Antisense
GGATTTTCCATATGACACTAACCCA 490 509 1743 Antisense
CGATTTCAGCCTACGTGGATTTGCG 576 247 1812 Antisense
Sequence Source Affymetrix Proprietary Database