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[177276_at]

Description ZK6.8 /REP_DB=WormBase Gene ID /WP=CE18445 /TR=O61865 /GB=AAG45570.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 97      4grp_total > 09      6grp_total_sub > Increase      6grp_rule_based > S6      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 647
1 2 3 4 range
A 105.9
(-3)
A 		137
(-2.6)
A 		172.6
(-2)
A 		521.3
(3)
P 		415
B 88
(-3)
A 		117.3
(-2.7)
A 		175
(-2.2)
A 		710.3
(3)
P 		622
C 63.7
(-3)
A 		187.3
(-1.7)
A 		160.2
(-2)
A 		626
(3)
P 		562
avr 85.9
(-3) 		147.2
(-2.3) 		169.3
(-2.1) 		619.2
(3) 		533

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 1257
1 2 3 4 5 6 range
A 102.3
(-3)
A 		195
(-2.6)
A 		202.5
(-2.5)
M 		306.2
(-2)
A 		676.6
(-0.2)
P 		1339.3
(3)
P 		1237
B 93
(-3)
A 		221.9
(-2)
A 		318.3
(-1.3)
A 		353.4
(-1.1)
P 		599.3
(0.8)
P 		902.8
(3)
P 		810
C 82.6
(-3)
A 		206.6
(-2)
M 		307.1
(-1.2)
M 		281.1
(-1.4)
P 		598.5
(1.2)
P 		812.2
(3)
P 		730
avr 92.6
(-3) 		207.8
(-2.3) 		276
(-1.8) 		313.6
(-1.6) 		624.8
(0.5) 		1018.1
(3) 		926
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 130
1 2 3 4 range
A 38.6
(-1.9)
A 		29.7
(-3)
A 		45.1
(-1)
A 		76.3
(3)
P 		47
B 28.1
(-3)
A 		29
(-3)
A 		40.5
(-2.4)
A 		151.4
(3)
P 		123
C 21.1
(-3)
A 		53.8
(-0.7)
A 		55.8
(-0.5)
A 		105.6
(3)
P 		85
avr 29.3
(-3) 		37.5
(-2.4) 		47.1
(-1.7) 		111.1
(3) 		82

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 318
1 2 3 4 5 6 range
A 18.9
(-3)
A 		69.3
(-2)
A 		44.1
(-2.5)
M 		77.6
(-1.9)
A 		204.2
(0.6)
P 		326.1
(3)
P 		307
B 32.4
(-3)
A 		73.9
(-2.2)
A 		77.3
(-2.1)
A 		93.6
(-1.8)
P 		243.5
(1.2)
P 		336.7
(3)
P 		304
C 30.6
(-3)
A 		63
(-2.2)
M 		78.2
(-1.8)
M 		56.5
(-2.4)
P 		193.7
(1.1)
P 		271.9
(3)
P 		241
avr 27.3
(-3) 		68.7
(-2.1) 		66.5
(-2.2) 		75.9
(-2) 		213.8
(0.9) 		311.6
(3) 		284
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177276_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.15388
Sequence Type Exemplar sequence
Representative Public ID ZK6.8 NCBI
Target Description ZK6.8 /REP_DB=WormBase Gene ID /WP=CE18445 /TR=O61865 /GB=AAG45570.1 /SUBMIT=ST.LOUIS /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_070782(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_070782 NCBI Caenorhabditis elegans ZK6.8 (ZK6.8) mRNA, complete cds. 11/11 None
SNAP00000041434 ENSEMBL cdna:SNAP chromosome:CEL140:V:381749:384352:1 11/11 None
GENEFINDER00000041448 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:381749:385149:1 9/11 None
ZK6.8 ENSEMBL cdna:known chromosome:CEL140:V:381749:384352:1 gene:ZK6.8 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:381748-384352(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZK6.8
Entrez Gene 191208 Entrez gene
SwissProt O61865 EMBL-EBI
WormBase CE18445 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAG45570 Hypothetical protein ZK6.8 [Caenorhabditis elegans] ref|NP_503183.1| ZK6.8 [Caenorhabditis elegans] 0.0
blast CAE58269 Hypothetical protein CBG01375 [Caenorhabditis briggsae] 0.0
blast CAE58263 Hypothetical protein CBG01365 [Caenorhabditis briggsae] 1.0E-171
Protein Domains
Database ID Description E-Value
Pfam IPR010291 EMBL-EBI Eukaryotic protein of unknown function DUF895 1.1E-103
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_503183.1 12 21-43,67-89,96-113,118-140,153-175,207-229,263-282,297-319,332-354,374-396,409-426,430-452
ZK6.8 12 21-43,67-89,96-113,118-140,153-175,207-229,263-282,297-319,332-354,374-396,409-426,430-452
SNAP00000041434 12 21-43,67-89,96-113,118-140,153-175,207-229,263-282,297-319,332-354,374-396,409-426,430-452
GENEFINDER00000041448 12 21-43,67-89,96-113,118-140,153-175,207-229,263-282,297-319,332-354,374-396,408-430,435-457
Sequence
Target Sequence 
>C. ELEGANS:177276_AT
ttcccgccatctacagtttcggtgtcggccttggagagactactatgggtctgctgatct
ccttctgtagcaagagaatcaagaacttcggaatgcggccaacaatgttcatcggatgct
ttttgacttgcctctattgcgcactagttgtcatttctactccaccaaccgccccgatgg
ctccaacatctgaaaaacccctgctcttccagccaacacgatacttggtcttcataattg
ccctaatcggtggaatgtcagattgttgcctgtgcagtgttagatcagttgtatgtgcaa
tcgcgatgccaacaagaaggaatcaagcattttcagtctcgaaattttatcaggccatcg
gttgctgtgtgatcttcttcatttccccgctcctcaacatctactactacgtaatcggaa
ttccgatcctctgcatcatcgccagcgtatgcttcttcttcgagacgcgccgcatcaaac
aa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTCCCGCCATCTACAGTTTCGGTGT 484 697 908 Antisense
GTTTCGGTGTCGGCCTTGGAGAGAC 217 451 923 Antisense
GACTACTATGGGTCTGCTGATCTCC 293 373 945 Antisense
TGCCTCTATTGCGCACTAGTTGTCA 341 585 1036 Antisense
TAGTTGTCATTTCTACTCCACCAAC 360 653 1052 Antisense
CTCCAACATCTGAAAAACCCCTGCT 283 237 1088 Antisense
CTTGGTCTTCATAATTGCCCTAATC 516 217 1131 Antisense
TTATCAGGCCATCGGTTGCTGTGTG 189 681 1254 Antisense
GTTGCTGTGTGATCTTCTTCATTTC 112 441 1268 Antisense
CATCATCGCCAGCGTATGCTTCTTC 90 213 1341 Antisense
CTTCGAGACGCGCCGCATCAAACAA 37 221 1365 Antisense
Sequence Source Affymetrix Proprietary Database