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[177275_at]

Description M60.7 /REP_DB=WormBase Gene ID /WP=CE25958 /TR=Q9GYM5 /GB=AAF99997.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 49      6grp_high1_10_10 > 93      4grp_highest_8_8 > 23      4grp_high_8_8 > 06      6grp_highest_nonorm > 92      6grp_total > 84      4grp_total > 02      6grp_highest_sub > 04_05_06      6grp_high1_sub > 04      6grp_total_sub > Hat      6grp_rule_based > S4      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2357
1 2 3 4 range
A 83.1
(-3)
P 		173.6
(-2.8)
P 		88.5
(-3)
P 		2427.7
(3)
P 		2345
B 134.3
(-2.8)
P 		70.5
(-3)
P 		118.9
(-2.9)
P 		2299.1
(3)
P 		2229
C 93.7
(-3)
P 		127.7
(-2.9)
P 		85
(-3)
P 		2191.4
(3)
P 		2106
avr 103.7
(-3) 		123.9
(-2.9) 		97.5
(-3) 		2306.1
(3) 		2209

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 402
1 2 3 4 5 6 range
A 115
(-3)
P 		154.4
(-2.2)
P 		182.9
(-1.6)
P 		318.8
(1.3)
P 		402.2
(3)
P 		337.4
(1.6)
P 		287
B 99.2
(-3)
P 		133.8
(-2.3)
P 		229.4
(-0.4)
P 		399.3
(3)
P 		366.9
(2.4)
P 		311.7
(1.2)
P 		300
C 112.5
(-3)
P 		201.3
(-1.6)
P 		185.2
(-1.9)
P 		500.9
(3)
P 		408.9
(1.6)
P 		370.9
(1)
P 		388
avr 108.9
(-3) 		163.2
(-1.9) 		199.2
(-1.2) 		406.3
(3) 		392.7
(2.7) 		340
(1.7) 		297
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 473
1 2 3 4 range
A 30.2
(-2.9)
P 		37.7
(-2.7)
P 		23.1
(-3)
P 		355.4
(3)
P 		332
B 42.8
(-2.7)
P 		17.4
(-3)
P 		27.5
(-2.9)
P 		489.9
(3)
P 		473
C 31
(-3)
P 		36.7
(-2.9)
P 		29.6
(-3)
P 		369.5
(3)
P 		340
avr 34.7
(-2.9) 		30.6
(-2.9) 		26.7
(-3) 		404.9
(3) 		378

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 128
1 2 3 4 5 6 range
A 21.2
(-3)
P 		54.9
(-1)
P 		39.8
(-1.9)
P 		80.9
(0.6)
P 		121.4
(3)
P 		82.1
(0.6)
P 		100
B 34.5
(-3)
P 		44.5
(-2.5)
P 		55.7
(-1.9)
P 		105.8
(0.7)
P 		149.1
(3)
P 		116.2
(1.3)
P 		115
C 41.7
(-3)
P 		61.4
(-1.7)
P 		47.1
(-2.6)
P 		100.7
(0.9)
P 		132.3
(3)
P 		124.2
(2.5)
P 		91
avr 32.5
(-3) 		53.6
(-1.8) 		47.5
(-2.1) 		95.8
(0.7) 		134.3
(3) 		107.5
(1.4) 		102
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177275_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.16596
Sequence Type Exemplar sequence
Representative Public ID M60.7 NCBI
Target Description M60.7 /REP_DB=WormBase Gene ID /WP=CE25958 /TR=Q9GYM5 /GB=AAF99997.1 /SUBMIT=ST.LOUIS /CHR=X /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_076993(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_076993 NCBI Caenorhabditis elegans M60.7 (M60.7) mRNA, complete cds. 11/11 None
SNAP00000012323 ENSEMBL cdna:SNAP chromosome:CEL140:X:8258424:8261113:-1 11/11 None
GENEFINDER00000012325 ENSEMBL cdna:GeneFinder chromosome:CEL140:X:8258424:8261110:-1 11/11 None
M60.7 ENSEMBL cdna:known chromosome:CEL140:X:8258424:8261113:-1 gene:M60.7 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrX:8258422-8261112(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl M60.7
Entrez Gene 187467 Entrez gene
SwissProt Q9GYM5 EMBL-EBI
WormBase CE25958 Wormbase
Functional Annotations
Gene Ontology
GO Biological Process (view graph)
ID Description Evidence Links
7242 intracellular signaling cascade inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast AAF99997 Hypothetical protein M60.7 [Caenorhabditis elegans] ref|NP_509394.1| M60.7 [Caenorhabditis elegans] 0.0
blast T28855 hypothetical protein M60.7 - Caenorhabditis elegans 0.0
blast CAE74865 Hypothetical protein CBG22724 [Caenorhabditis briggsae] 0.0
Protein Domains
Database ID Description E-Value
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.1
Pfam IPR002110 EMBL-EBI Ankyrin 1.3
Pfam IPR002110 EMBL-EBI Ankyrin 6.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.059
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.5
Pfam IPR002110 EMBL-EBI Ankyrin 3.1
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.1
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 3.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.059
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.5
Pfam IPR002110 EMBL-EBI Ankyrin 3.1
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-7
Pfam IPR002110 EMBL-EBI Ankyrin 1.8E-4
Pfam IPR002110 EMBL-EBI Ankyrin 1.1E-4
Pfam IPR002110 EMBL-EBI Ankyrin 0.1
Pfam IPR002110 EMBL-EBI Ankyrin 1.2E-4
Pfam IPR002110 EMBL-EBI Ankyrin 3.1E-5
Pfam IPR002110 EMBL-EBI Ankyrin 0.059
Pfam IPR002110 EMBL-EBI Ankyrin 4.7E-5
Pfam IPR002110 EMBL-EBI Ankyrin 4.5
Pfam IPR002110 EMBL-EBI Ankyrin 3.1
Sequence
Target Sequence 
>C. ELEGANS:177275_AT
tgttctcgacgctggagcaaatccaaatgccgttcacacctacattggatcatgccttca
tttggcatcctgttcaagtcttctcaaccaataccaaatcgtggagcttctgttggagca
cggagctgatatgaatcttcaacaccaattcccagatgggtcccgcttgaaaagcccatt
tgttgagtacttccgctcgaacgacagcatcgacgcaaaagtagtgaagctctttattac
tcatggagctaaggttgttatgagaaatccacttcacgactgccgtggacaactacggaa
tgtgctcaagttggctgctcttcaaaatcagccagaggttctggaacttcttttggggct
tggtgagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TGTTCTCGACGCTGGAGCAAATCCA 656 561 807 Antisense
TGCCGTTCACACCTACATTGGATCA 609 585 834 Antisense
ATTTGGCATCCTGTTCAAGTCTTCT 146 19 866 Antisense
AAGTCTTCTCAACCAATACCAAATC 268 157 882 Antisense
GTGGAGCTTCTGTTGGAGCACGGAG 310 491 907 Antisense
GAATCTTCAACACCAATTCCCAGAT 190 327 939 Antisense
TTCCCAGATGGGTCCCGCTTGAAAA 80 697 955 Antisense
GCCCATTTGTTGAGTACTTCCGCTC 423 285 980 Antisense
ATGAGAAATCCACTTCACGACTGCC 697 45 1066 Antisense
CGGAATGTGCTCAAGTTGGCTGCTC 323 243 1102 Antisense
GAACTTCTTTTGGGGCTTGGTGAGC 300 351 1150 Antisense
Sequence Source Affymetrix Proprietary Database