[Home] | [Total List]

[177274_s_at]

Description R166.4 /REP_DB=WormBase Gene ID /WP=CE03583 /TR=Q22006 /GB=CAA90666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 95      6grp_high1_10_10 > 69      4grp_highest_8_8 > 27      4grp_high_8_8 > 63      6grp_highest_nonorm > 82      6grp_total > 79      4grp_total > 56      6grp_highest_sub > Cu      6grp_cgc > 29      6grp_high1_sub > Cu      6grp_cgc_sub > Cu      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 319
1 2 3 4 range
A 397.9
(-2.9)
P 		425.8
(-2.1)
P 		600.9
(3)
P 		393.5
(-3)
P 		207
B 458.6
(2.4)
P 		298.9
(-3)
P 		476.2
(3)
P 		400.2
(0.4)
P 		177
C 428.7
(-0)
P 		349
(-1.6)
P 		579.1
(3)
P 		281.8
(-3)
P 		297
avr 428.4
(-0.8) 		357.9
(-3) 		552.1
(3) 		358.5
(-3) 		194

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 289
1 2 3 4 5 6 range
A 304.8
(-1.2)
P 		340.8
(-0.4)
P 		228.3
(-3)
P 		282.8
(-1.7)
P 		368.6
(0.3)
P 		485.5
(3)
P 		257
B 354.9
(-0.4)
P 		487.6
(2.4)
P 		318.7
(-1.2)
P 		231.6
(-3)
P 		350
(-0.5)
P 		517
(3)
P 		285
C 321.7
(-1.5)
P 		381.6
(0.4)
P 		273.1
(-3)
P 		336.7
(-1)
P 		453.2
(2.7)
P 		462.2
(3)
P 		189
avr 327.1
(-1.5) 		403.3
(0.6) 		273.4
(-3) 		283.7
(-2.7) 		390.6
(0.3) 		488.2
(3) 		215
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 154
1 2 3 4 range
A 144.9
(2.3)
P 		92.4
(-0.9)
P 		157.1
(3)
P 		57.6
(-3)
P 		100
B 146.3
(3)
P 		73.8
(-3)
P 		110.3
(0)
P 		85.3
(-2)
P 		73
C 141.9
(0.7)
P 		100.3
(-0.9)
P 		201.8
(3)
P 		47.5
(-3)
P 		154
avr 144.4
(2.2) 		88.8
(-1.4) 		156.4
(3) 		63.5
(-3) 		93

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 143
1 2 3 4 5 6 range
A 56.2
(-2.5)
P 		121.2
(3)
P 		49.7
(-3)
P 		71.7
(-1.2)
P 		111.2
(2.2)
P 		118.2
(2.7)
P 		72
B 123.5
(-0.2)
P 		162.3
(1.6)
P 		77.4
(-2.3)
P 		61.3
(-3)
P 		142.2
(0.7)
P 		192.8
(3)
P 		132
C 119.2
(0.6)
P 		116.4
(0.4)
P 		69.5
(-2.9)
P 		67.7
(-3)
P 		146.7
(2.4)
P 		154.7
(3)
P 		87
avr 99.6
(-0.7) 		133.3
(1.5) 		65.5
(-3) 		66.9
(-2.9) 		133.4
(1.5) 		155.2
(3) 		90
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177274_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.2864
Sequence Type Exemplar sequence
Representative Public ID R166.4 NCBI
Target Description R166.4 /REP_DB=WormBase Gene ID /WP=CE03583 /TR=Q22006 /GB=CAA90666.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_063870(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_063870 NCBI Caenorhabditis elegans PROximal proliferation in germline family member (pro-1) (pro-1) mRNA, complete cds. 11/11 None
SNAP00000017514 ENSEMBL cdna:SNAP chromosome:CEL140:II:10539459:10541418:-1 11/11 None
GENEFINDER00000017519 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:10539459:10541895:-1 11/11 None
R166.4 ENSEMBL cdna:known chromosome:CEL140:II:10539370:10541906:-1 gene:R166.4 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:10539455-10541892(-) 96.67 100.0
Public Domain and Genome References
Gene Title
Gene Symbol pro-1
Ensembl R166.4
Entrez Gene 174622 Entrez gene
SwissProt Q22006 EMBL-EBI
WormBase CE03583 Wormbase
Functional Annotations
Ortholog
ID Title Organism
ATH1-121501:252252_AT transducin family protein / WD-40 repeat family protein at
CANINE_2:CFAAFFX.30049.1.S1_AT similar to WD-repeat protein 18 cfa
DROSOPHILA_2:1627087_AT dm
DROSGENOME1:143992_AT dm
HG-U95AV2:35983_AT WD repeat domain 18 hs
HU35KSUBA:RC_AA279315_AT WD repeat domain 18 hs
HG-U133A:209461_X_AT WD repeat domain 18 hs
HG-U133_PLUS_2:209461_X_AT WD repeat domain 18 hs
HG-U133A_2:209461_X_AT WD repeat domain 18 hs
U133_X3P:G12804480_3P_S_AT WD repeat domain 18 hs
U133_X3P:G12804480_3P_AT WD repeat domain 18 hs
RG-U34B:RC_AI014023_AT WD repeat domain 18 (predicted) rn
RAE230A:1375439_AT WD repeat domain 18 (predicted) rn
RAT230_2:1375439_AT WD repeat domain 18 (predicted) rn
Protein Similarities
Method ID Description E-Value
blast CAA90666 Hypothetical protein R166.4 [Caenorhabditis elegans] ref|NP_496271.1| PROximal proliferation in germline family member (pro-1) [Caenorhabditis elegans] 0.0
blast CAE59657 Hypothetical protein CBG03075 [Caenorhabditis briggsae] 0.0
blast AAI02947 MGC128350 protein [Bos taurus] ref|NP_001029760.1| hypothetical protein LOC533356 [Bos taurus] 1.0E-34
Protein Domains
Database ID Description E-Value
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.045
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.0E-6
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 8.3E-4
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 0.045
Pfam IPR001680 EMBL-EBI G-protein beta WD-40 repeat 4.0E-6
Sequence
Target Sequence 
>C. ELEGANS:177274_S_AT
gtctcaaggtatcaacaatgcgctcagtaatcaataccctccgtttcattccattctgga
aaacgatcagcggaggagaacacgtcgccaaatttcgtccagtttgggatttgaaacgag
aacctacaaaatgcgatcgtttcgcaattgaagtatccactgaatttaactctgatcaga
agcattggaatgacgtcattgaagaaactattgatcaacttttgttggaatctggaagca
aatcatctgcacaattacaatgggacgccgaaggacctgctagaaatgaagctgcaaaag
cagaaaaagcagcagaaaatacaattaaaaatatcattactcttggagatgatgaagatg
atgcaccagaagttggaaatcagagaagaaaaagtggaaaaaagaataaaaagaatagga
agaatcaaaagaaaaatgattttgaagcagcagttattgagaagaaacaagtagaaccga
ttgttattgatgacgaagaagaagtcaattcctcgcttcagaagaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GTCTCAAGGTATCAACAATGCGCTC 28 471 980 Antisense
TCAGTAATCAATACCCTCCGTTTCA 536 621 1003 Antisense
GATCAGCGGAGGAGAACACGTCGCC 480 419 1044 Antisense
ACACGTCGCCAAATTTCGTCCAGTT 654 109 1059 Antisense
GAACCTACAAAATGCGATCGTTTCG 274 345 1099 Antisense
GATCGTTTCGCAATTGAAGTATCCA 458 417 1114 Antisense
GTATCCACTGAATTTAACTCTGATC 546 455 1132 Antisense
GAAGCAAATCATCTGCACAATTACA 306 341 1214 Antisense
TGCACAATTACAATGGGACGCCGAA 620 575 1227 Antisense
GGACGCCGAAGGACCTGCTAGAAAT 536 523 1242 Antisense
AAGTCAATTCCTCGCTTCAGAAGAA 306 157 1481 Antisense
Sequence Source Affymetrix Proprietary Database