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[177273_at]

Description ZC15.5 /REP_DB=WormBase Gene ID /WP=CE16686 /TR=O18268 /GB=CAB07712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 55      4grp_total > 35      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 74
1 2 3 4 range
A 65.4
(-0.6)
A 		89.2
(3)
A 		55.7
(-2.1)
A 		49.4
(-3)
A 		40
B 27.2
(-3)
A 		91.4
(3)
A 		70.1
(1)
A 		56.8
(-0.2)
A 		64
C 62.7
(1.8)
A 		17.1
(-3)
A 		27
(-2)
A 		73.9
(3)
A 		57
avr 51.8
(-2.6) 		65.9
(3) 		50.9
(-3) 		60
(0.6) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 90
1 2 3 4 5 6 range
A 6.5
(-3)
A 		45.9
(-0.4)
A 		70.3
(1.2)
A 		24.1
(-1.8)
A 		49.7
(-0.1)
A 		96.7
(3)
A 		90
B 26.7
(-3)
A 		49.1
(3)
A 		46.7
(2.4)
A 		29.5
(-2.3)
A 		29.7
(-2.2)
A 		40.6
(0.7)
A 		22
C 31.2
(-0.5)
A 		33.9
(-0.1)
A 		60.2
(3)
A 		37.9
(0.3)
A 		10
(-3)
A 		38
(0.3)
A 		50
avr 21.5
(-3) 		43
(0.4) 		59.1
(3) 		30.5
(-1.6) 		29.8
(-1.7) 		58.4
(2.9) 		38
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 23.8
(3)
A 		19.4
(1.4)
A 		14.6
(-0.3)
A 		7.2
(-3)
A 		17
B 8.7
(-3)
A 		22.6
(3)
A 		16.2
(0.2)
A 		12.1
(-1.5)
A 		14
C 20.8
(3)
A 		4.9
(-3)
A 		9.4
(-1.3)
A 		12.5
(-0.1)
A 		16
avr 17.8
(3) 		15.6
(1.2) 		13.4
(-0.7) 		10.6
(-3) 		7

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 22
1 2 3 4 5 6 range
A 1.2
(-3)
A 		16.3
(1.1)
A 		15.3
(0.8)
A 		6.1
(-1.7)
A 		15
(0.7)
A 		23.5
(3)
A 		22
B 9.3
(-2)
A 		16.4
(3)
A 		11.3
(-0.6)
A 		7.8
(-3)
A 		12.1
(0)
A 		15.1
(2.1)
A 		9
C 11.6
(1.2)
A 		10.3
(0.5)
A 		15.3
(3)
A 		7.6
(-0.8)
A 		3.2
(-3)
A 		12.7
(1.7)
A 		12
avr 7.4
(-2.9) 		14.3
(1.3) 		14
(1.1) 		7.2
(-3) 		10.1
(-1.2) 		17.1
(3) 		10
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177273_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14774
Sequence Type Exemplar sequence
Representative Public ID ZC15.5 NCBI
Target Description ZC15.5 /REP_DB=WormBase Gene ID /WP=CE16686 /TR=O18268 /GB=CAB07712.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075513(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075513 NCBI Caenorhabditis elegans ZC15.5 (ZC15.5) mRNA, complete cds. 11/11 None
ZC15.5 ENSEMBL cdna:known chromosome:CEL140:V:20294599:20300312:1 gene:ZC15.5 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NM_078318 1/11 Cross Hyb Matching Probes A 
SNAP00000015576 1/11 Cross Hyb Matching Probes None
GENEFINDER00000015586 7/11 Cross Hyb Matching Probes None
SNAP00000036412 1/11 Cross Hyb Matching Probes None
GENEFINDER00000036421 1/11 Cross Hyb Matching Probes None
F41G4.7 1/11 Cross Hyb Matching Probes A 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20294598-20300312(+) 91.08 99.39
Public Domain and Genome References
Gene Title
Ensembl ZC15.5
Entrez Gene 191052 Entrez gene
SwissProt O18268 EMBL-EBI
WormBase CE16686 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAB07712 Hypothetical protein ZC15.5 [Caenorhabditis elegans] ref|NP_507914.1| ZC15.5 [Caenorhabditis elegans] 0.0
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_507914.1 2 87-109,514-536
ZC15.5 2 87-109,514-536
Sequence
Target Sequence 
>C. ELEGANS:177273_AT
aaatctcaccggacggattcttctctccatccccgatctgactgtcataggaaccactac
ttcctcaggacagagccgagcaatcgctgccctcacggcttctggtcaatcgataaaagg
ccagtgggaactgccaaaaaatcggcttccccccggaagaattaccccggaaatctactc
tgcaaattcggaaatctccatccgcctccaaatcaaggaaaatcgcaatttaaattgccg
ccaattgaatttctggctgactacggtagacaattgcgaccacggcacacgatctgccgc
acaatcacggactttctactttcgaatcccaaaattaattttggatgttttatggatttt
tttctggattttcacgcatttcttcgctccactcgttcatttattacacttttgtgacgt
cctatccacaataagtctgcaattttccaggatcgagcacactcacgcttggacatgcca
aacaagagcaccgacgacgataatcctccgctgccctgcagctgcccagcttctagaagc

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
AAATCTCACCGGACGGATTCTTCTC 141 119 1206 Antisense
GAACCACTACTTCCTCAGGACAGAG 525 345 1256 Antisense
CTCACGGCTTCTGGTCAATCGATAA 462 227 1297 Antisense
AGAATTACCCCGGAAATCTACTCTG 12 13 1363 Antisense
AAATTCGGAAATCTCCATCCGCCTC 670 115 1389 Antisense
GGTAGACAATTGCGACCACGGCACA 42 505 1470 Antisense
GCACAATCACGGACTTTCTACTTTC 20 317 1504 Antisense
TCTGGATTTTCACGCATTTCTTCGC 621 607 1568 Antisense
GCTCCACTCGTTCATTTATTACACT 667 297 1591 Antisense
AATTTTCCAGGATCGAGCACACTCA 349 175 1646 Antisense
CTGCAGCTGCCCAGCTTCTAGAAGC 629 237 1721 Antisense
Sequence Source Affymetrix Proprietary Database