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[177272_at]

Description Y37E11AL.K /REP_DB=WormBase Gene ID /WP=CE26065 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59454.1
Cluster 6grp_total > 89      4grp_total > 45      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 84
1 2 3 4 range
A 77.2
(3)
A 		51.1
(0.5)
A 		49
(0.3)
A 		13.5
(-3)
A 		64
B 29.3
(-2.6)
A 		65.5
(3)
P 		51.2
(0.8)
P 		26.9
(-3)
A 		39
C 97.5
(3)
A 		86.8
(2)
A 		32.1
(-3)
A 		61.3
(-0.3)
A 		65
avr 68
(3) 		67.8
(3) 		44.1
(-1.2) 		33.9
(-3) 		34

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 136
1 2 3 4 5 6 range
A 132.2
(3)
A 		93.7
(-0.9)
P 		95.6
(-0.7)
A 		72.6
(-3)
P 		123.6
(2.1)
P 		117.2
(1.5)
P 		60
B 68.3
(-3)
A 		85.5
(-1.3)
A 		90.1
(-0.8)
A 		107.7
(1)
A 		117
(2)
P 		127.3
(3)
P 		59
C 38.7
(-1.9)
M 		72.2
(-0.4)
A 		36.1
(-2)
A 		13.4
(-3)
A 		122.2
(1.8)
P 		149.1
(3)
P 		136
avr 79.7
(-1.6) 		83.8
(-1.3) 		73.9
(-2.2) 		64.6
(-3) 		120.9
(2.1) 		131.2
(3) 		67
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 30
1 2 3 4 range
A 28.1
(3)
A 		11.1
(-0.9)
A 		12.8
(-0.5)
A 		2
(-3)
A 		26
B 9.4
(-0.9)
A 		16.2
(3)
P 		11.9
(0.5)
P 		5.7
(-3)
A 		11
C 32.3
(3)
A 		25
(1)
A 		11.2
(-2.8)
A 		10.3
(-3)
A 		22
avr 23.3
(3) 		17.4
(1) 		12
(-0.9) 		6
(-3) 		17

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 47
1 2 3 4 5 6 range
A 24.4
(-1.1)
A 		33.3
(1.7)
P 		20.8
(-2.2)
A 		18.4
(-3)
P 		37.3
(3)
P 		28.5
(0.2)
P 		19
B 23.8
(-2.6)
A 		28.4
(-1.5)
A 		21.9
(-3)
A 		28.5
(-1.5)
A 		47.6
(3)
P 		47.5
(3)
P 		26
C 14.3
(-1.5)
M 		22
(-0.5)
A 		9.2
(-2.2)
A 		2.7
(-3)
A 		39.5
(1.7)
P 		49.9
(3)
P 		47
avr 20.8
(-2) 		27.9
(-0.3) 		17.3
(-2.8) 		16.5
(-3) 		41.5
(2.9) 		42
(3) 		26
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177272_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19264
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.K NCBI
Target Description Y37E11AL.K /REP_DB=WormBase Gene ID /WP=CE26065 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59454.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067998(9)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067998 NCBI Caenorhabditis elegans Y37E11AL.2 (Y37E11AL.2) mRNA, complete cds. 9/11 None
SNAP00000035936 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3698515:3699677:1 9/11 None
GENEFINDER00000035944 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3698515:3699677:1 11/11 None
Y37E11AL.2 ENSEMBL cdna:known chromosome:CEL140:IV:3698515:3699677:1 gene:Y37E11AL.2 9/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3698520-3699683(+) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.2
Entrez Gene 177131 Entrez gene
SwissProt Q9N443 EMBL-EBI
WormBase CE30218 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59454 Hypothetical protein Y37E11AL.2 [Caenorhabditis elegans] ref|NP_500399.2| Y37E11AL.2 [Caenorhabditis elegans] 1.0E-79
blast AAF59454 Hypothetical protein Y37E11AL.2 [Caenorhabditis elegans] ref|NP_500399.2| Y37E11AL.2 [Caenorhabditis elegans] 3.0E-77
blast CAE63763 Hypothetical protein CBG08299 [Caenorhabditis briggsae] 6.0E-59
blast CAE63763 Hypothetical protein CBG08299 [Caenorhabditis briggsae] 3.0E-58
blast NP_498008 C35D10.8 [Caenorhabditis elegans] gb|AAA62565.2| Hypothetical protein C35D10.8 [Caenorhabditis elegans] 3.0E-16
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
NP_500399.2 2 33-55,59-81
Y37E11AL.2 2 33-55,59-81
SNAP00000035936 2 33-55,59-81
GENEFINDER00000035944 2 42-64,68-90
Sequence
Target Sequence 
>C. ELEGANS:177272_AT
caatgtcggccgccaaatcttcgaaggctccgagcgtctataatgtcaaaaagtttaata
aatgtttcaacagagttcctttcaatgcatcatttctcacgattctaaccatctgcggga
cacttcaaatctctgctcttgtcccggccgtcggctccgtgctctccgtgctcctttcgc
ttttcacttatgagtggctcaatttgcacttctcgtcgatgaccagaagtcgccgcgctt
gtttcgacgtggcgaatgtgttagagacttatcagccgagagcccgaactcatgggcatt
tgtttgtgccggatccaccaactccatgcgtgaaaatctcggaagacggaaaccaacacg
acgcgccgaaggaaaagaccgctttcagcagtgccagggactcgcactacgagaacatgt
accaaaaggcgattcaaatggcaaaggaaatggatcaaatggagaaagtggcggcgagcc
cgtgccttgactcctcccaggatgttgaa

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CAATGTCGGCCGCCAAATCTTCGAA 664 173 74 Antisense
GGCTCCGAGCGTCTATAATGTCAAA 260 539 99 Antisense
ACAGAGTTCCTTTCAATGCATCATT 144 109 143 Antisense
GCATCATTTCTCACGATTCTAACCA 511 307 160 Antisense
ATTCTAACCATCTGCGGGACACTTC 265 9 175 Antisense
GACACTTCAAATCTCTGCTCTTGTC 416 367 192 Antisense
TTTGCACTTCTCGTCGATGACCAGA 686 667 276 Antisense
TAGAGACTTATCAGCCGAGAGCCCG 139 653 335 Antisense
GGCATTTGTTTGTGCCGGATCCACC 495 533 368 Antisense
GGAAAAGACCGCTTTCAGCAGTGCC 429 527 444 Antisense
CCTTGACTCCTCCCAGGATGTTGAA 624 267 558 Antisense
Sequence Source Affymetrix Proprietary Database