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[177271_at]

Description DH11.5 /REP_DB=WormBase Gene ID /WP=CE02174 /TR=Q19017 /GB=CAA88942.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Cluster 6grp_highest_10_10 > 20      6grp_high1_10_10 > 23      4grp_highest_8_8 > 54      4grp_high_8_8 > 10      6grp_highest_nonorm > 31      6grp_total > 03      4grp_total > 23      6grp_highest_sub > De      6grp_high1_sub > 02      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 1205
1 2 3 4 range
A 1604.8
(3)
P 		667.2
(-3)
P 		680.6
(-2.9)
P 		1547
(2.6)
P 		938
B 1498.8
(2.3)
P 		806.7
(-1.5)
P 		540.9
(-3)
P 		1635.2
(3)
P 		1094
C 1746
(3)
P 		712.2
(-3)
P 		717.6
(-3)
P 		1583.6
(2.1)
P 		1034
avr 1616.5
(3) 		728.7
(-2.5) 		646.4
(-3) 		1588.6
(2.8) 		970

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 631
1 2 3 4 5 6 range
A 992.6
(0.2)
P 		1274.3
(3)
P 		813.1
(-1.6)
P 		904.3
(-0.7)
P 		888.5
(-0.8)
P 		672.9
(-3)
P 		601
B 1042.7
(1.3)
P 		1192.1
(3)
P 		913.4
(-0.1)
P 		873.5
(-0.5)
P 		1019.5
(1.1)
P 		652.5
(-3)
P 		540
C 1229.8
(3)
P 		1147.1
(2.2)
P 		949.5
(0.1)
P 		1070.1
(1.4)
P 		756
(-1.8)
P 		643.3
(-3)
P 		587
avr 1088.4
(1.7) 		1204.5
(3) 		892
(-0.4) 		949.3
(0.2) 		888
(-0.5) 		656.2
(-3) 		548
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 459
1 2 3 4 range
A 584.3
(3)
P 		144.8
(-3)
P 		177.9
(-2.5)
P 		226.4
(-1.9)
P 		440
B 477.9
(3)
P 		199.2
(-1.7)
P 		125.3
(-3)
P 		348.5
(0.8)
P 		353
C 578
(3)
P 		204.8
(-3)
P 		250.1
(-2.3)
P 		267
(-2)
P 		373
avr 546.7
(3) 		182.9
(-3) 		184.4
(-3) 		280.6
(-1.4) 		364

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 292
1 2 3 4 5 6 range
A 183
(-2.6)
P 		453.2
(3)
P 		177.1
(-2.7)
P 		229.4
(-1.6)
P 		268.1
(-0.8)
P 		163.8
(-3)
P 		289
B 362.8
(1.4)
P 		396.8
(2.5)
P 		221.8
(-3)
P 		231.4
(-2.7)
P 		414.2
(3)
P 		243.3
(-2.3)
P 		192
C 455.8
(3)
P 		350
(0.4)
P 		241.7
(-2.3)
P 		215.2
(-3)
P 		244.6
(-2.3)
P 		215.4
(-3)
P 		241
avr 333.9
(0.9) 		400
(3) 		213.5
(-2.8) 		225.3
(-2.4) 		309
(0.2) 		207.5
(-3) 		193
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177271_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.3220
Sequence Type Exemplar sequence
Representative Public ID DH11.5 NCBI
Target Description DH11.5 /REP_DB=WormBase Gene ID /WP=CE02174 /TR=Q19017 /GB=CAA88942.1 /SUBMIT=HINXTON /CHR=2 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_182172(10), NM_063271(11), NM_182173(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_182172 NCBI Caenorhabditis elegans DH11.5b (DH11.5) mRNA, complete cds. 10/11 None
NM_063271 NCBI Caenorhabditis elegans DH11.5a (DH11.5) mRNA, complete cds. 11/11 None
NM_182173 NCBI Caenorhabditis elegans DH11.5c (DH11.5) mRNA, complete cds. 10/11 None
SNAP00000004558 ENSEMBL cdna:SNAP chromosome:CEL140:II:7985226:7987784:1 10/11 None
GENEFINDER00000004564 ENSEMBL cdna:GeneFinder chromosome:CEL140:II:7985226:7990529:1 11/11 None
DH11.5b ENSEMBL cdna:known chromosome:CEL140:II:7976536:7988097:1 gene:DH11.5 10/11 None
DH11.5a ENSEMBL cdna:known chromosome:CEL140:II:7976591:7990114:1 gene:DH11.5 11/11 None
DH11.5c ENSEMBL cdna:known chromosome:CEL140:II:7985158:7987784:1 gene:DH11.5 10/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrII:7985246-7988597(+) 100.0 100.0
Public Domain and Genome References
Ensembl DH11.5
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast CAD56554 Hypothetical protein DH11.5a [Caenorhabditis elegans] emb|CAA88942.2| Hypothetical protein DH11.5a [Caenorhabditis elegans] ref|NP_495672.2| DH11.5a [Caenorhabditis elegans] 0.0
blast CAD56554 Hypothetical protein DH11.5a [Caenorhabditis elegans] emb|CAA88942.2| Hypothetical protein DH11.5a [Caenorhabditis elegans] ref|NP_495672.2| DH11.5a [Caenorhabditis elegans] 1.0E-175
blast CAD56555 Hypothetical protein DH11.5b [Caenorhabditis elegans] emb|CAD56566.1| Hypothetical protein DH11.5b [Caenorhabditis elegans] ref|NP_871972.1| DH11.5b [Caenorhabditis elegans] 1.0E-175
blast CAD56565 Hypothetical protein DH11.5c [Caenorhabditis elegans] ref|NP_871973.1| DH11.5c [Caenorhabditis elegans] 1.0E-156
Sequence
Target Sequence 
>C. ELEGANS:177271_AT
cgccagcgcctcaggcaatgtgtataacaacggagaatattcgcaaagttgtgatttgat
caatggacgttctcgtaaatctccatccacaacaaacgatagtggacgtgggagccaagg
tcatttggaagagaaaatggaagctatggtaattgaagagcatcttgaaaatgactgtgg
atgcgaggaggaagaagagattgatgctcctattctgagcagcaaacgatctggtattaa
tagacatcgtaccagttcttgtccggatatcacttcattgggtctcaatcatccaacaac
ctctgctgcatcatctggaggaaaaaagtgtccaattgcagtagacactgacacagaaga
ggataactttgaacgagtaaaaagaccgtgctctcctatttcagctgctgattgtcttgt
cgaacgtcgtcttaatcgcaagttcatcgaacaacgtcgtcaacaagttgccatgtgtca
catcg

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGCCAGCGCCTCAGGCAATGTGTAT 372 257 420 Antisense
TGGACGTTCTCGTAAATCTCCATCC 303 547 483 Antisense
TACCAGTTCTTGTCCGGATATCACT 218 649 669 Antisense
CGGATATCACTTCATTGGGTCTCAA 676 243 683 Antisense
TGGGTCTCAATCATCCAACAACCTC 56 555 698 Antisense
CAACCTCTGCTGCATCATCTGGAGG 100 187 716 Antisense
TAAAAAGACCGTGCTCTCCTATTTC 72 639 797 Antisense
GCTCTCCTATTTCAGCTGCTGATTG 10 301 809 Antisense
GCTGATTGTCTTGTCGAACGTCGTC 301 289 826 Antisense
ACGTCGTCTTAATCGCAAGTTCATC 321 95 843 Antisense
CAACAAGTTGCCATGTGTCACATCG 264 189 880 Antisense
Sequence Source Affymetrix Proprietary Database