[Home] | [Total List]

[177268_at]

Description Y37E11AL.E /REP_DB=WormBase Gene ID /WP=CE21552 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59448.1
Cluster 6grp_total > 53      4grp_total > 36      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 65
1 2 3 4 range
A 44.5
(3)
A 		19.7
(-0.6)
A 		2.8
(-3)
A 		14.4
(-1.3)
A 		42
B 10.3
(3)
A 		4.1
(-1.8)
A 		2.6
(-3)
A 		7.1
(0.5)
A 		8
C 32.1
(-0.2)
A 		67
(3)
A 		2.5
(-3)
A 		53.6
(1.8)
A 		65
avr 29
(2.7) 		30.3
(3) 		2.6
(-3) 		25
(1.9) 		28

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 19
1 2 3 4 5 6 range
A 5.4
(-1.9)
A 		3.2
(-2.8)
A 		17.3
(3)
A 		2.6
(-3)
A 		15.1
(2.1)
A 		5.1
(-2)
A 		15
B 2
(-2.9)
A 		6.8
(-1.1)
A 		6.8
(-1.1)
A 		17.3
(3)
A 		7.5
(-0.8)
A 		1.8
(-3)
A 		16
C 10.9
(-0.3)
A 		3
(-2.9)
A 		21.1
(3)
A 		2.6
(-3)
A 		7.8
(-1.3)
A 		6.4
(-1.8)
A 		19
avr 6.1
(-2) 		4.3
(-3) 		15.1
(3) 		7.5
(-1.2) 		10.1
(0.2) 		4.4
(-2.9) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 19
1 2 3 4 range
A 16.2
(3)
A 		4.3
(-1.6)
A 		0.7
(-3)
A 		2.1
(-2.5)
A 		16
B 3.3
(3)
A 		1
(-2.1)
A 		0.6
(-3)
A 		1.5
(-1)
A 		3
C 10.6
(0.2)
A 		19.3
(3)
A 		0.9
(-3)
A 		9
(-0.4)
A 		18
avr 10
(3) 		8.2
(1.8) 		0.7
(-3) 		4.2
(-0.7) 		9

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 5
1 2 3 4 5 6 range
A 1
(-2.5)
A 		1.1
(-2.4)
A 		3.8
(1.8)
A 		0.7
(-3)
A 		4.6
(3)
A 		1.2
(-2.2)
A 		4
B 0.7
(-3)
A 		2.3
(-0.5)
A 		1.6
(-1.6)
A 		4.6
(3)
A 		3.1
(0.7)
A 		0.7
(-3)
A 		4
C 4.1
(1.4)
A 		0.9
(-2.5)
A 		5.4
(3)
A 		0.5
(-3)
A 		2.5
(-0.6)
A 		2.1
(-1)
A 		5
avr 1.9
(-1.4) 		1.4
(-2.7) 		3.6
(3) 		1.9
(-1.4) 		3.4
(2.5) 		1.3
(-3) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177268_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19288
Sequence Type Exemplar sequence
Representative Public ID Y37E11AL.E NCBI
Target Description Y37E11AL.E /REP_DB=WormBase Gene ID /WP=CE21552 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF59448.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_067994(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_067994 NCBI Caenorhabditis elegans Y37E11AL.6 (Y37E11AL.6) mRNA, complete cds. 11/11 None
SNAP00000035933 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3665245:3666806:-1 9/11 None
GENEFINDER00000035947 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3658559:3668698:-1 9/11 None
Y37E11AL.6 ENSEMBL cdna:known chromosome:CEL140:IV:3663801:3668698:-1 gene:Y37E11AL.6 11/11 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3663806-3668704(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl Y37E11AL.6
Entrez Gene 189621 Entrez gene
SwissProt Q9N448 EMBL-EBI
WormBase CE21552 Wormbase
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF59448 Hypothetical protein Y37E11AL.6 [Caenorhabditis elegans] ref|NP_500395.1| Y37E11AL.6 [Caenorhabditis elegans] 0.0
blast CAE63779 Hypothetical protein CBG08318 [Caenorhabditis briggsae] 0.0
blast AAF59450 Hypothetical protein Y37E11AL.5 [Caenorhabditis elegans] ref|NP_500393.2| Y37E11AL.5 [Caenorhabditis elegans] 0.0
blast AAF59448 Hypothetical protein Y37E11AL.6 [Caenorhabditis elegans] ref|NP_500395.1| Y37E11AL.6 [Caenorhabditis elegans] 1.0E-141
blast CAE63779 Hypothetical protein CBG08318 [Caenorhabditis briggsae] 1.0E-133
Protein Domains
Database ID Description E-Value
Pfam IPR000203 EMBL-EBI GPS domain 1.7E-6
Trans Membrane
ID Number Of Domains Domain Boundaries
GENEFINDER00000035947 7 720-742,754-773,788-810,831-853,875-897,918-940,946-968
Sequence
Target Sequence 
>C. ELEGANS:177268_AT
ttggcgatcgactacggaagccctcagctgttcactatcgccaacatcactctgatccca
gtgaccgtatccatggtccgggagcttcatgtcaatgtggccaccgaggagtatcagatt
tttgagtgggaacatccgcagtacggcactgtagataaatatcggctcgggattcgacgc
gacgatcaggtggtgtatgaggaggagctggaagccgcgaaaactctggcactgaccaag
attatgctttccaactcgatgaacgtcagtttccaagtgactgcaattgacgagaatggg
gagacttcgagtgaatggacacagattggaccaattgatagggacgtaatctgcaaggga
gaatgttctcgtggcggcacacctctctgctatgttggcgccttcaaccgcgtcgagcag
ttcatcgatgctcgcggagcccactgcctttgctatccgggattcatgggtgtctcgtgt
gagactatcggatccatgtggactctcaccactcttgatgtattt

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
TTGGCGATCGACTACGGAAGCCCTC 359 709 658 Antisense
TGATCCCAGTGACCGTATCCATGGT 448 565 710 Antisense
ATCCATGGTCCGGGAGCTTCATGTC 54 41 726 Antisense
GTGGGAACATCCGCAGTACGGCACT 601 475 783 Antisense
AATATCGGCTCGGGATTCGACGCGA 94 173 815 Antisense
TCGACGCGACGATCAGGTGGTGTAT 588 601 831 Antisense
GAAGCCGCGAAAACTCTGGCACTGA 193 345 868 Antisense
TCAACCGCGTCGAGCAGTTCATCGA 453 631 1061 Antisense
TATCCGGGATTCATGGGTGTCTCGT 102 659 1111 Antisense
TATCGGATCCATGTGGACTCTCACC 661 657 1143 Antisense
GACTCTCACCACTCTTGATGTATTT 42 375 1158 Antisense
Sequence Source Affymetrix Proprietary Database