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[177263_s_at]

Description ZC15.6 /REP_DB=WormBase Gene ID /WP=CE16687 /TR=O18269 /GB=CAB07713.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Cluster 6grp_total > 91      4grp_total > 10      4grp_rule_based > L4      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 98
1 2 3 4 range
A 18.5
(-3)
A 		23.1
(-0.8)
A 		27.8
(1.5)
A 		30.9
(3)
A 		12
B 23.7
(-1.3)
A 		21.6
(-1.5)
A 		5.3
(-3)
A 		68.8
(3)
A 		64
C 10
(-3)
A 		15.9
(-2.6)
A 		10.1
(-3)
A 		103.4
(3)
A 		93
avr 17.4
(-2.7) 		20.2
(-2.3) 		14.4
(-3) 		67.7
(3) 		53

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 77
1 2 3 4 5 6 range
A 56.5
(3)
A 		10.7
(-2.2)
A 		13.9
(-1.8)
A 		33.9
(0.4)
A 		9.4
(-2.4)
A 		3.7
(-3)
A 		53
B 46.2
(0.3)
A 		80.2
(3)
A 		3.3
(-3)
A 		48.6
(0.5)
A 		72.9
(2.4)
A 		27.3
(-1.1)
A 		77
C 10.3
(-0.8)
A 		14.2
(0.4)
A 		2.8
(-3)
A 		21.4
(2.6)
A 		14.1
(0.4)
A 		22.9
(3)
A 		20
avr 37.7
(3) 		35
(2.5) 		6.7
(-3) 		34.6
(2.4) 		32.1
(1.9) 		18
(-0.8) 		31
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 16
1 2 3 4 range
A 6.7
(1.7)
A 		5
(-1.9)
A 		7.3
(3)
A 		4.5
(-3)
A 		3
B 7.6
(-0.2)
A 		5.3
(-1.2)
A 		1.2
(-3)
A 		14.7
(3)
A 		14
C 3.3
(-3)
A 		4.6
(-2.4)
A 		3.5
(-2.9)
A 		17.4
(3)
A 		14
avr 5.9
(-1.6) 		5
(-2.3) 		4
(-3) 		12.2
(3) 		8

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 29
1 2 3 4 5 6 range
A 10.4
(3)
A 		3.8
(-1.2)
A 		3
(-1.7)
A 		8.6
(1.9)
A 		2.9
(-1.7)
A 		0.9
(-3)
A 		10
B 16.1
(0.2)
A 		26.7
(2.4)
A 		0.8
(-3)
A 		12.9
(-0.5)
A 		29.6
(3)
A 		10.2
(-1)
A 		29
C 3.8
(-0.3)
A 		4.3
(0.1)
A 		0.7
(-3)
A 		4.3
(0.1)
A 		4.5
(0.3)
A 		7.7
(3)
A 		7
avr 10.1
(1.8) 		11.6
(2.6) 		1.5
(-3) 		8.6
(0.9) 		12.3
(3) 		6.3
(-0.3) 		11
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177263_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.14662
Sequence Type Exemplar sequence
Representative Public ID ZC15.6 NCBI
Target Description ZC15.6 /REP_DB=WormBase Gene ID /WP=CE16687 /TR=O18269 /GB=CAB07713.1 /SUBMIT=HINXTON /CHR=5 /FEA=Sanger Annotation
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_075512(11)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_075512 NCBI Caenorhabditis elegans ZC15.6 (ZC15.6) mRNA, complete cds. 11/11 None
GENEFINDER00000015587 ENSEMBL cdna:GeneFinder chromosome:CEL140:V:20287990:20292539:-1 11/11 None
ZC15.6 ENSEMBL cdna:known chromosome:CEL140:V:20287990:20292539:-1 gene:ZC15.6 11/11 None
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
SNAP00000015574 3/11 Cross Hyb Matching Probes None
SNAP00000015575 7/11 Cross Hyb Matching Probes None
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrV:20287989-20292539(-) 100.0 100.0
Public Domain and Genome References
Gene Title
Ensembl ZC15.6
Entrez Gene 180330 Entrez gene
SwissProt O18269 EMBL-EBI
WormBase CE16687 Wormbase
Functional Annotations
Gene Ontology
GO Molecular Function (view graph)
ID Description Evidence Links
5529 sugar binding inferred from electronic annotation QuickGO AmiGO
Protein Similarities
Method ID Description E-Value
blast CAB07713 Hypothetical protein ZC15.6 [Caenorhabditis elegans] ref|NP_507913.1| ZC15.6 [Caenorhabditis elegans] 1.0E-103
blast CAE61134 Hypothetical protein CBG04895 [Caenorhabditis briggsae] 1.0E-47
blast CAE61126 Hypothetical protein CBG04885 [Caenorhabditis briggsae] emb|CAE61097.1| Hypothetical protein CBG04852 [Caenorhabditis briggsae] 3.0E-47
Sequence
Target Sequence 
>C. ELEGANS:177263_S_AT
ggaggcaattgcagccctggatggttgagatttgagcggcaaagcggagtttggtgtgtc
tttgtcggcctagccggaatcaacgacaactcatttgcacagaaggacggacaaagcgcc
tgtgtggctcttggagccacattaaccggattccaaaacgataaagaacgtatggctgtg
gcagatgaagctggaagaaagcttggagccgccggcggaggaattgccggactttggtta
ggagccacaactcgcgcgggctgcaaagctggcgcatgtggaccactgaacacctttatg
tggaccgatggtgtcactactggcacagccgggcttaaatgggctactggagagcctgat
agtgtggattatccaggaaccgccgcgtgcatccaacaattcatcatgctccccaactgg
gtacccggaccctatgacctggaaggcttcagaactggcttcacacatggaattctttac
aaattttcgtgtattgctccagtgac

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
GGAGGCAATTGCAGCCCTGGATGGT 566 515 154 Antisense
CGGCCTAGCCGGAATCAACGACAAC 596 239 219 Antisense
ACAAAGCGCCTGTGTGGCTCTTGGA 447 111 264 Antisense
GGCTCTTGGAGCCACATTAACCGGA 415 539 279 Antisense
TGGAGCCGCCGGCGGAGGAATTGCC 480 543 357 Antisense
GCAAAGCTGGCGCATGTGGACCACT 74 319 416 Antisense
GTGGACCACTGAACACCTTTATGTG 144 491 431 Antisense
GGACCGATGGTGTCACTACTGGCAC 611 523 455 Antisense
CGGACCCTATGACCTGGAAGGCTTC 691 239 579 Antisense
AGGCTTCAGAACTGGCTTCACACAT 107 55 597 Antisense
AATTTTCGTGTATTGCTCCAGTGAC 312 175 635 Antisense
Sequence Source Affymetrix Proprietary Database