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[177262_s_at]

Description Y71F9AL.13 /REP_DB=WormBase Gene ID /WP=CE25552 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF36008.1
Cluster 6grp_highest_10_10 > 05      6grp_high1_10_10 > 50      4grp_highest_8_8 > 07      4grp_high_8_8 > 21      6grp_highest_nonorm > 08      6grp_total > 41      4grp_total > 18      6grp_highest_sub > 03_04      6grp_cgc > 83      6grp_high1_sub > 03_04      6grp_cgc_sub > 03      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 15440
1 2 3 4 range
A 21774.1
(-3)
P 		27666.1
(-0.5)
P 		24324
(-1.9)
P 		36067.4
(3)
P 		14293
B 22460.3
(-3)
P 		23266.8
(-2.1)
P 		22677.2
(-2.8)
P 		27924.2
(3)
P 		5464
C 20672.3
(-3)
P 		22582.1
(-2.1)
P 		20627.5
(-3)
P 		33009.9
(3)
P 		12382
avr 21635.6
(-3) 		24505
(-1.4) 		22542.9
(-2.5) 		32333.8
(3) 		10698

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 8188
1 2 3 4 5 6 range
A 21048
(2.7)
P 		19630
(0.7)
P 		19958.9
(1.1)
P 		21240.1
(3)
P 		17090
(-3)
P 		19253.4
(0.1)
P 		4150
B 18552.8
(1.1)
P 		17376.8
(-0.2)
P 		20332.6
(3)
P 		18275.1
(0.7)
P 		15643.3
(-2.1)
P 		14846.2
(-3)
P 		5486
C 17194.6
(-0.7)
P 		19326.7
(0.8)
P 		22307.4
(3)
P 		20972.5
(2)
P 		18706.6
(0.4)
P 		14119.4
(-3)
P 		8188
avr 18931.8
(0.6) 		18777.8
(0.4) 		20866.3
(3) 		20162.6
(2.1) 		17146.6
(-1.7) 		16073
(-3) 		4793
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 2673
1 2 3 4 range
A 7928
(3)
P 		6005.6
(-1.4)
P 		6358.8
(-0.6)
P 		5279.6
(-3)
P 		2648
B 7162.4
(3)
P 		5746.4
(-1.5)
P 		5254.8
(-3)
P 		5950.7
(-0.8)
P 		1908
C 6843.1
(1.7)
P 		6492.5
(0.4)
P 		7189.3
(3)
P 		5566
(-3)
P 		1623
avr 7311.2
(3) 		6081.5
(-1.3) 		6267.6
(-0.7) 		5598.8
(-3) 		1712

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 3101
1 2 3 4 5 6 range
A 3880
(-3)
P 		6981.4
(3)
P 		4346.6
(-2.1)
P 		5387
(-0.1)
P 		5157
(-0.5)
P 		4687.6
(-1.4)
P 		3101
B 6455.5
(3)
P 		5784
(0.5)
P 		4937.4
(-2.6)
P 		4840.5
(-3)
P 		6355.7
(2.6)
P 		5536.1
(-0.4)
P 		1615
C 6373.3
(3)
P 		5897.2
(1.7)
P 		5677.6
(1.1)
P 		4217.6
(-3)
P 		6053.2
(2.1)
P 		4726.6
(-1.6)
P 		2156
avr 5569.6
(0.2) 		6220.9
(3) 		4987.2
(-2.3) 		4815
(-3) 		5855.3
(1.4) 		4983.4
(-2.3) 		1406
NetAffx Links Cluster Members
Consensus/Exemplar
Group Members
GeneChip Array Information
Probe Set ID 177262_s_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.303
Sequence Type Exemplar sequence
Representative Public ID Y71F9AL.13 NCBI
Target Description Y71F9AL.13 /REP_DB=WormBase Gene ID /WP=CE25552 /CHR=1 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF36008.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description This probe set was annotated using the Matching Probes based pipeline to a RefSeq identifier using 1 transcript(s).
Annotation Grade This is a grade A annotation.
Annotation Transcript Cluster (# of Matching Probes) NM_058660(11), NM_058661(10)
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
NM_058660 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-1) (rpl-1) mRNA, complete cds. 11/11 A 
NM_058661 NCBI Caenorhabditis elegans Ribosomal Protein, Large subunit family member (rpl-1) (rpl-1) mRNA, complete cds. 10/11 A B 
SNAP00000005885 ENSEMBL cdna:SNAP chromosome:CEL140:I:2875432:2876303:-1 11/11 None
GENEFINDER00000005901 ENSEMBL cdna:GeneFinder chromosome:CEL140:I:2875432:2876303:-1 11/11 None
Y71F9AL.13a.3 ENSEMBL cdna:known chromosome:CEL140:I:2875393:2876637:-1 gene:Y71F9AL.13 11/11 None
Y71F9AL.13a.1 ENSEMBL cdna:known chromosome:CEL140:I:2875393:2876313:-1 gene:Y71F9AL.13 11/11 A 
Y71F9AL.13a.2 ENSEMBL cdna:known chromosome:CEL140:I:2875393:2876309:-1 gene:Y71F9AL.13 11/11 A 
Y71F9AL.13b.3 ENSEMBL cdna:known chromosome:CEL140:I:2875425:2876309:-1 gene:Y71F9AL.13 11/11 A 
Y71F9AL.13b.6 ENSEMBL cdna:known chromosome:CEL140:I:2875432:2876308:-1 gene:Y71F9AL.13 10/11 A 
Y71F9AL.13b.4 ENSEMBL cdna:known chromosome:CEL140:I:2875432:2876309:-1 gene:Y71F9AL.13 10/11 A 
Y71F9AL.13b.1 ENSEMBL cdna:known chromosome:CEL140:I:2875432:2876287:-1 gene:Y71F9AL.13 10/11 A 
Y71F9AL.13b.2 ENSEMBL cdna:known chromosome:CEL140:I:2875432:2876309:-1 gene:Y71F9AL.13 11/11 A 
Annotation Notes
Cross Hybridizing mRNA Matched Probes Nature of Assignment Related Probesets by Grade
NR_002353 4/11 Cross Hyb Matching Probes None
NR_002354 4/11 Cross Hyb Matching Probes None
AJ270980 7/11 Cross Hyb Matching Probes A B 
Y71F9AL.13b.5 5/11 Cross Hyb Matching Probes A B 
Y71F9AL.13b.7 4/11 Cross Hyb Matching Probes A B 
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrI:2875431-2876303(-) 100.0 100.0
Public Domain and Genome References
Ensembl Y71F9AL.13
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF36008 Ribosomal protein, large subunit protein 1, isoform a [Caenorhabditis elegans] ref|NP_491061.1| Ribosomal Protein, Large subunit family member (rpl-1) [Caenorhabditis elegans] sp|Q9N4I4|RL10A_CAEEL 60S ribosomal protein L10a 1.0E-106
blast CAE60592 Hypothetical protein CBG04228 [Caenorhabditis briggsae] 1.0E-104
Protein Domains
Database ID Description E-Value
Pfam IPR002143 EMBL-EBI Ribosomal protein L1 4.9E-89
Pfam IPR002143 EMBL-EBI Ribosomal protein L1 1.4E-64
Sequence
Target Sequence 
>C. ELEGANS:177262_S_AT
atgaggctatcgctgaggtccttaagggatcctcggaaaagccacgcaagttccgtgaga
ctatcgagctccagatcggtctcaagaactacgacccacagaaggacaagcgtttcagcg
gatccatcagactgaagcacattccacgcccaaacatgaaggtgtgcgtcttcggagacc
agcaccatcttgacgaggctgccgccggagacattccatcgatgagcgccgatgacttga
agaag

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
ATGAGGCTATCGCTGAGGTCCTTAA 222 45 41 Antisense
GATCCTCGGAAAAGCCACGCAAGTT 700 415 68 Antisense
AGTTCCGTGAGACTATCGAGCTCCA 425 63 89 Antisense
TCGAGCTCCAGATCGGTCTCAAGAA 101 603 104 Antisense
GTCTCAAGAACTACGACCCACAGAA 650 467 119 Antisense
AGGACAAGCGTTTCAGCGGATCCAT 471 55 143 Antisense
ATCAGACTGAAGCACATTCCACGCC 427 29 166 Antisense
CACATTCCACGCCCAAACATGAAGG 240 195 178 Antisense
GGTGTGCGTCTTCGGAGACCAGCAC 10 501 201 Antisense
CAGCACCATCTTGACGAGGCTGCCG 642 201 220 Antisense
GATGAGCGCCGATGACTTGAAGAAG 403 411 261 Antisense
Sequence Source Affymetrix Proprietary Database