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[177261_at]

Description Y46C8AL.J /REP_DB=WormBase Gene ID /WP=CE25297 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60604.1
Cluster 6grp_total > 70      4grp_total > 16      6grp_total_sub > Hat      

Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 48
1 2 3 4 range
A 8.3
(-3)
A 		12.5
(-2.4)
A 		8.2
(-3)
A 		52.6
(3)
A 		44
B 10.8
(-2.4)
A 		13.5
(-1.8)
A 		35.1
(3)
A 		8.2
(-3)
A 		27
C 5.9
(-0.9)
A 		8.5
(3)
A 		4.5
(-3)
A 		8.5
(3)
A 		4
avr 8.3
(-3) 		11.5
(-1.7) 		15.9
(0.1) 		23.1
(3) 		15

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 21
1 2 3 4 5 6 range
A 4.2
(-1.8)
A 		4.8
(-1.3)
A 		9
(2.3)
A 		9.9
(3)
A 		3.4
(-2.4)
A 		2.7
(-3)
A 		7
B 11.6
(-0.6)
A 		10
(-1.1)
A 		9.5
(-1.2)
A 		23.8
(3)
A 		3.5
(-3)
A 		6.9
(-2)
A 		20
C 2.9
(-3)
A 		6.5
(-0)
A 		4.8
(-1.4)
A 		10.2
(3)
A 		4.2
(-1.9)
A 		9.8
(2.7)
A 		7
avr 6.2
(-1.6) 		7.1
(-1.1) 		7.8
(-0.7) 		14.6
(3) 		3.7
(-3) 		6.5
(-1.5) 		11
No Scale
G range Absolute graph Relative graph Expression Table Dauer Comp.
4 7
1 2 3 4 range
A 3
(-2.1)
A 		2.7
(-2.5)
A 		2.2
(-3)
A 		7.7
(3)
A 		6
B 3.4
(-1.5)
A 		3.3
(-1.6)
A 		8.1
(3)
A 		1.8
(-3)
A 		6
C 1.9
(0)
A 		2.4
(3)
A 		1.6
(-1.8)
A 		1.4
(-3)
A 		1
avr 2.8
(-3) 		2.8
(-3) 		4
(3) 		3.6
(1) 		1

1 : 1 state (S1, L1)
2 : dauer (ST, LT)
6 6
1 2 3 4 5 6 range
A 0.8
(-2.7)
A 		1.7
(0.3)
A 		2
(1.3)
A 		2.5
(3)
A 		1
(-2)
A 		0.7
(-3)
A 		2
B 4
(0.2)
A 		3.3
(-0.7)
A 		2.3
(-1.9)
A 		6.3
(3)
A 		1.4
(-3)
A 		2.6
(-1.5)
A 		5
C 1.1
(-3)
A 		2
(-0.5)
A 		1.2
(-2.7)
A 		2
(-0.5)
A 		1.4
(-2.2)
A 		3.3
(3)
A 		2
avr 2
(-1.2) 		2.3
(-0.4) 		1.8
(-1.7) 		3.6
(3) 		1.3
(-3) 		2.2
(-0.7) 		2
NetAffx Links Cluster Members
Consensus/Exemplar
GeneChip Array Information
Probe Set ID 177261_at
GeneChip Array C. elegans Genome Array
Organism Common Name Nematode
Probe Design Information
Transcript ID(Array Design) affy.Ce.19293
Sequence Type Exemplar sequence
Representative Public ID Y46C8AL.J NCBI
Target Description Y46C8AL.J /REP_DB=WormBase Gene ID /WP=CE25297 /CHR=4 /FEA=Sanger Annotation /DEF=(ST.LOUIS) protein_id:AAF60604.1
Cluster Evidence This cluster is supported by a Sanger Annotation.
Annotation Method Description
Annotation Description Only library file information is available for this probe set. See probe design information above.
Transcript Assignments
Representative
Transcript		 Description Matching Probes Related Probesets by Grade
SNAP00000030672 ENSEMBL cdna:SNAP chromosome:CEL140:IV:3953411:3959626:1 None
GENEFINDER00000030684 ENSEMBL cdna:GeneFinder chromosome:CEL140:IV:3953411:3953965:1 None
Annotation Notes
There are no noteworthy cross hybridizing mRNAs found for this probe set.
Genomic Alignment of Consensus/Exemplar Sequence
Assembly Wormbase March 2004
Alignment(s)
Position Identity Coverage Cytoband
chrIV:3952378-3953929(+) 98.91 100.0
Functional Annotations
Protein Similarities
Method ID Description E-Value
blast AAF60605 Hypothetical protein Y46C8AL.8 [Caenorhabditis elegans] ref|NP_500446.1| Y46C8AL.8 [Caenorhabditis elegans] 1.0E-142
blast AAN73861 Hypothetical protein F56D6.2 [Caenorhabditis elegans] ref|NP_500437.2| F56D6.2 [Caenorhabditis elegans] 1.0E-141
blast E88656 protein F56D6.2 [imported] - Caenorhabditis elegans 1.0E-139
blast AAA80411 Oligopeptide transporter protein 2 [Caenorhabditis elegans] ref|NP_509087.1| OligoPeptide Transporter family member (opt-2) [Caenorhabditis elegans] sp|Q21219|OPT2_CAEEL Oligopeptide transporter 2 (Di-/tri-peptide transporter CPTB) 4.0E-25
blast AAC39119 low-affinity peptide transporter [Caenorhabditis elegans] 4.0E-25
blast CAE61262 Hypothetical protein CBG05068 [Caenorhabditis briggsae] 8.0E-24
Protein Domains
Trans Membrane
ID Number Of Domains Domain Boundaries
SNAP00000030672 2 41-63,70-92
GENEFINDER00000030684 2 49-71,81-103
Sequence
Target Sequence 
>C. ELEGANS:177261_AT
cgtggctacgccgacagtattagacaatattattaggcagtaccaaggctgtgcggctgt
cggctgtcggcgtcagccgacagccgagaaattggcctcgtttcggctgtcggcgtcagc
cgacagccgagttattggttttttcggctgtttcgaaaaattttacaaaaaaaaattctc
aataacattgtccaaaatatgctccgatcagaagtctgccccatcgatgaaagctcttgt
acaagctctttggctcttgaccgtcgctggtggagacgcgataattgtcctcatcacgat
cctcaacttattttacaatatggctgttcaattctttgtctatgctgctgccatgtttgt
cgttattgctatcttcgcgctactctctattttctactacactta

BLASTn GenBank NR
Probe Info
Probe Sequence(5'-3') Probe X Probe Y Probe Interrogation
Position 		Strandedness
CGTGGCTACGCCGACAGTATTAGAC 285 245 36 Antisense
TAGGCAGTACCAAGGCTGTGCGGCT 240 653 69 Antisense
CCGAGAAATTGGCCTCGTTTCGGCT 305 263 119 Antisense
AATATGCTCCGATCAGAAGTCTGCC 569 117 231 Antisense
GCCCCATCGATGAAAGCTCTTGTAC 353 285 253 Antisense
TACAAGCTCTTTGGCTCTTGACCGT 570 641 275 Antisense
TGACCGTCGCTGGTGGAGACGCGAT 697 569 293 Antisense
AGACGCGATAATTGTCCTCATCACG 477 71 309 Antisense
CATCACGATCCTCAACTTATTTTAC 635 211 327 Antisense
CTGCTGCCATGTTTGTCGTTATTGC 575 237 380 Antisense
TACTCTCTATTTTCTACTACACTTA 110 647 416 Antisense
Sequence Source Affymetrix Proprietary Database